refactor(research): update /research command and subagents for better organization

Author: apiad

.gemini/agents/reporter.md

@@ -6,7 +6,6 @@ tools:
   - list_directory
   - read_file
   - replace
-model: gemini-2.0-flash
 max_turns: 15
 ---
 

.gemini/agents/researcher.md

@@ -6,21 +6,20 @@ tools:
   - google_web_search
   - web_fetch
   - write_file
-model: gemini-2.0-flash
 max_turns: 15
 ---
 
 You are a Senior Researcher. Your primary goal is to gather detailed, high-quality information on a specific question and compile it into a detailed markdown source file.
 
 **Your Workflow:**
+
 1.  **Search & Fetch:** Use `google_web_search` and `web_fetch` to find and download relevant content from authoritative sources.
-2.  **Synthesize:** Create a comprehensive markdown summary of the gathered information. This should include:
-    - **Detailed Findings:** A deep dive into the specific data, facts, and code snippets related to the question.
-    - **References:** A list of all URLs and sources used, with a brief explanation for each.
-3.  **Store:** Use `write_file` to save this summary into the `research/` directory with a descriptive name (e.g., `research/topic_name_summary.md`).
+2.  **Synthesize:** For *each* relevant source, create a comprehensive markdown summary of the gathered information. This should include a deep dive into the specific data, facts, and code snippets related to the question.
+3.  **Store:** Use `write_file` to save this source summary into the `research/` directory with a descriptive name (e.g., `research/topic_name_summary.md`).
 4.  **Confirm:** Once the file is written, confirm its completion.
 
 **Key Guidelines:**
+
 - **Exhaustive Detail:** Prioritize depth over brevity. We need as much relevant information as possible to build a robust report.
 - **Accuracy:** Ensure all facts and code examples are correctly attributed and verified across multiple sources where possible.
 - **Organization:** Structure the markdown source logically so it's easy for another agent to read and extract information from.

.gemini/commands/research.toml

@@ -5,21 +5,22 @@ You are an expert researcher. Follow this robust 3-phase workflow to conduct exh
 
 **Phase 1: Planning**
 1. Analyze the topic and break it down into high-level questions.
+   DO NOT ASSUME any premade answers such as specific technologies, methods, or sources. Instead, focus on the core questions that need to be answered to fully understand the topic.
 2. Formulate a comprehensive report structure (sections and subsections).
-3. Create a `research/` directory to hold the gathered data.
+3. Create a `research/<topic>/` directory to hold the gathered data.
 4. Present this plan to the user for approval.
 
 **Phase 2: Data Gathering**
 1. Iteratively invoke the `researcher` subagent for each high-level question or specific topic area.
-2. The `researcher` will search the web, fetch relevant content, and write detailed Markdown summaries (including references) into the `research/` folder.
-3. Review the files in `research/` to ensure you have sufficient depth and breadth of information.
+2. The `researcher` will search the web, fetch relevant content, and write detailed Markdown summaries (including references) into the `research/<topic>/` folder.
+3. Review the files in `research/<topic>/` to ensure you have sufficient depth and breadth of information.
 4. If gaps exist, invoke the `researcher` again with more specific queries. Do not proceed until you have a critical mass of detailed sources.
 
 **Phase 3: Reporting**
-1. Create a `report.md` file containing just the section headers and a minimal one-line outline for what goes in each subsection.
+1. Create a `/research/<report-title>.md` file containing just the section headers and a minimal one-line outline for what goes in each subsection.
 2. Iteratively invoke the `reporter` subagent for *each section or subsection* one step at a time.
-3. Instruct the `reporter` to read the sources in `research/*.md` and expand that specific section in `report.md` with full, lengthy, and detailed paragraphs.
-4. Continue this process until the entire `report.md` is complete.
+3. Instruct the `reporter` to read the sources in `research/<topic>/*.md` and expand that specific section in the report with full, lengthy, and detailed paragraphs.
+4. Continue this process until the entire report is complete.
 
 Do not stop until all phases are complete and the report is fully fleshed out.
 """

.gitignore

@@ -1,4 +1,3 @@
 *.log
 *.env
-research/*.md
-__pycache__
+__pycache__