forked from Illumina/hap.py
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathexpected.counts.json
More file actions
1 lines (1 loc) · 4.96 KB
/
Copy pathexpected.counts.json
File metadata and controls
1 lines (1 loc) · 4.96 KB
1
{"FN::missing::QUERY":{"locations":1,"unknown_gt":1},"FN::missing::TRUTH":{"alleles":1,"del":1,"del__het":1,"het":1,"locations":1},"FN::missing:CONF:QUERY":{"locations":1089,"unknown_gt":1089},"FN::missing:CONF:TRUTH":{"alleles":1103,"del":2564,"del__het":315,"del__homalt":45,"het":941,"hetalt":14,"homalt":134,"ins":4130,"ins__het":453,"ins__hetalt":14,"ins__homalt":65,"locations":1089,"snp":197,"snp__het":173,"snp__homalt":24},"FN:HapMatch:missing:CONF:QUERY":{"locations":73,"unknown_gt":73},"FN:HapMatch:missing:CONF:TRUTH":{"alleles":74,"del":77,"del__het":27,"del__homalt":11,"het":47,"hetalt":1,"homalt":25,"ins":57,"ins__het":20,"ins__hetalt":1,"ins__homalt":14,"locations":73},"FP::almismatch:CONF:QUERY":{"alleles":28,"del":42,"del__het":1,"del__homalt":6,"het":16,"hetalt":1,"homalt":10,"ins":76,"ins__het":10,"ins__hetalt":1,"ins__homalt":3,"locations":27,"snp":6,"snp__het":5,"snp__homalt":1},"FP::almismatch:CONF:TRUTH":{"alleles":29,"del":56,"del__het":5,"del__homalt":3,"het":20,"hetalt":2,"homalt":5,"ins":71,"ins__het":10,"ins__hetalt":2,"ins__homalt":1,"locations":27,"snp":6,"snp__het":5,"snp__homalt":1},"FP::alpartial:CONF:QUERY":{"alleles":59,"blocksubst_ins_del__hetalt":2,"del":9,"het":2,"hetalt":13,"homalt":31,"ins":244,"ins__het":2,"ins__hetalt":5,"ins__homalt":31,"locations":46,"snp":12,"snp__hetalt":6},"FP::alpartial:CONF:TRUTH":{"alleles":80,"del":1,"del__het":1,"het":4,"hetalt":34,"homalt":8,"ins":538,"ins__het":2,"ins__hetalt":34,"ins__homalt":3,"locations":46,"snp":6,"snp__het":1,"snp__homalt":5},"FP::gtmismatch:CONF:QUERY":{"alleles":180,"del":137,"del__het":5,"del__homalt":30,"het":121,"homalt":59,"ins":80,"ins__het":14,"ins__homalt":22,"locations":180,"snp":109,"snp__het":102,"snp__homalt":7},"FP::gtmismatch:CONF:TRUTH":{"alleles":180,"del":137,"del__het":30,"del__homalt":5,"het":59,"homalt":121,"ins":80,"ins__het":22,"ins__homalt":14,"locations":180,"snp":109,"snp__het":7,"snp__homalt":102},"FP::missing::QUERY":{"alleles":41095,"blocksubst_ins_del__hetalt":39,"del":6885,"del__het":1298,"del__hetalt":2,"del__homalt":590,"het":37817,"hetalt":260,"homalt":2758,"ins":4495,"ins__het":883,"ins__hetalt":95,"ins__homalt":551,"locations":40835,"snp":37501,"snp__het":35636,"snp__hetalt":124,"snp__homalt":1617},"FP::missing::TRUTH":{"locations":40835,"unknown_gt":40835},"FP::missing:CONF:QUERY":{"alleles":455,"del":532,"del__het":60,"del__hetalt":1,"del__homalt":17,"het":399,"hetalt":3,"homalt":50,"ins":106,"ins__het":13,"ins__hetalt":2,"ins__homalt":4,"locations":452,"snp":355,"snp__het":326,"snp__homalt":29},"FP::missing:CONF:TRUTH":{"locations":452,"unknown_gt":452},"FP:HapMatch:almismatch:CONF:QUERY":{"alleles":2,"del":1,"del__het":1,"het":2,"ins":8,"ins__het":1,"locations":2},"FP:HapMatch:almismatch:CONF:TRUTH":{"alleles":2,"het":2,"ins":2,"ins__het":2,"locations":2},"FP:HapMatch:gtmismatch:CONF:QUERY":{"alleles":2,"homalt":2,"ins":2,"ins__homalt":2,"locations":2},"FP:HapMatch:gtmismatch:CONF:TRUTH":{"alleles":2,"het":2,"ins":2,"ins__het":2,"locations":2},"FP:HapMatch:missing::QUERY":{"alleles":14,"del":2,"del__het":1,"het":11,"hetalt":1,"homalt":1,"ins":25,"ins__het":4,"ins__hetalt":1,"ins__homalt":1,"locations":13,"snp":6,"snp__het":6},"FP:HapMatch:missing::TRUTH":{"locations":13,"unknown_gt":13},"FP:HapMatch:missing:CONF:QUERY":{"alleles":43,"del":49,"del__het":12,"het":29,"homalt":14,"locations":43,"snp":31,"snp__het":17,"snp__homalt":14},"FP:HapMatch:missing:CONF:TRUTH":{"locations":43,"unknown_gt":43},"TP::match:CONF:QUERY":{"alleles":60353,"blocksubst_ins_del__hetalt":38,"del":11148,"del__het":2442,"del__homalt":1597,"het":36488,"hetalt":152,"homalt":23561,"ins":9164,"ins__het":1960,"ins__hetalt":106,"ins__homalt":1866,"locations":60201,"snp":52200,"snp__het":32086,"snp__hetalt":8,"snp__homalt":20098},"TP::match:CONF:TRUTH":{"alleles":60353,"blocksubst_ins_del__hetalt":38,"del":11148,"del__het":2442,"del__homalt":1597,"het":36488,"hetalt":152,"homalt":23561,"ins":9164,"ins__het":1960,"ins__hetalt":106,"ins__homalt":1866,"locations":60201,"snp":52200,"snp__het":32086,"snp__hetalt":8,"snp__homalt":20098},"TP:HapMatch:match:CONF:QUERY":{"alleles":23,"del":82,"del__het":12,"het":22,"homalt":1,"ins":4,"ins__het":1,"locations":23,"snp":10,"snp__het":9,"snp__homalt":1},"TP:HapMatch:match:CONF:TRUTH":{"alleles":23,"del":82,"del__het":12,"het":22,"homalt":1,"ins":4,"ins__het":1,"locations":23,"snp":10,"snp__het":9,"snp__homalt":1},"all:QUERY":{"alleles":102254,"blocksubst_ins_del__hetalt":79,"del":18887,"del__het":3832,"del__hetalt":3,"del__homalt":2240,"het":74907,"hetalt":430,"homalt":26487,"ins":14204,"ins__het":2888,"ins__hetalt":210,"ins__homalt":2480,"locations":102987,"snp":90230,"snp__het":68187,"snp__hetalt":138,"snp__homalt":21767,"unknown_gt":1163},"all:TRUTH":{"alleles":61847,"blocksubst_ins_del__hetalt":38,"del":14066,"del__het":2833,"del__homalt":1661,"het":37586,"hetalt":203,"homalt":23855,"ins":14048,"ins__het":2472,"ins__hetalt":157,"ins__homalt":1963,"locations":102987,"snp":52528,"snp__het":32281,"snp__hetalt":8,"snp__homalt":20231,"unknown_gt":41343}}