Add abstract

analysis/Snakefile

@@ -12,10 +12,12 @@ latexopt = """
 docs_path = "../docs/"
 data_path = "../data/"
 osier_data = f"{data_path}2023-osier-simulation-results/"
+ch7_log = "ch7.log"
 ch5_log = "ch5.log"
 ch4_log = "ch4.log"
 ch3_log = "ch3.log"
 ch2_log = "ch2.log"
+ch1_log = "ch1.log"
 
 with open(f"{docs_path}Makefile", "r") as file:
     lines = file.readlines()
@@ -406,17 +408,130 @@ rule examples_chapter:
         done
         """
 
+#============================INTERVIEW CHAPTER================================
+rule plot_uiuc_emissions:
+    output:
+        uiuc_emissions_plot = f"{docs_path}figures/07_interview_chapter/uiuc_emissions_plot.pgf"
+    script:
+        "scripts/07-interview-scripts/plot_uiuc_emissions.py"
+
+rule retrieve_illinois_data:
+    output:
+        illinois_data = f"{data_path}cb_2024_us_county_500k.zip"
+    shell: f"""
+            (cd {data_path} && \
+            curl -O \
+            "https://www2.census.gov/geo/tiger/GENZ2024/shp/cb_2024_us_county_500k.zip")
+            """
+
+rule plot_illinois_regions:
+    input:
+        illinois_data = f"{data_path}cb_2024_us_county_500k.zip"
+    output:
+        illinois_plot = f"{docs_path}figures/07_interview_chapter/illinois_plot.pgf"
+    script:
+        "scripts/07-interview-scripts/plot_illinois_regions.py"
+
+
+rule plot_ares_ptc:
+    input:
+        ptc_data = f"{data_path}icc-ares-report-data.csv"
+    output:
+        ptc_plot = f"{docs_path}figures/07_interview_chapter/ptc_plot.pgf"
+    script:
+        "scripts/07-interview-scripts/plot_ptc_comparison.py"
+
+rule interview_chapter:
+    input:
+        uiuc_emissions_plot = f"{docs_path}figures/07_interview_chapter/uiuc_emissions_plot.pgf",
+        illinois_plot = f"{docs_path}figures/07_interview_chapter/illinois_plot.pgf",
+        ptc_plot = f"{docs_path}figures/07_interview_chapter/ptc_plot.pgf",
+    output:
+        ch7_log
+    shell:
+        """
+        for file in {input}; do
+            echo $file >> {output}
+        done
+        """
+#============================INTRODUCTION================================
+
+rule retrieve_mauna_loa_data:
+    output:
+        mauna_loa_data = f"{data_path}co2_mlo_surface-insitu_1_ccgg_DailyData.txt"
+    shell: f"""
+            (cd {data_path} && curl -O https://gml.noaa.gov/aftp/data/trace_gases/co2/in-situ/surface/txt/co2_mlo_surface-insitu_1_ccgg_DailyData.txt)
+            """
+
+rule retrieve_epa_inventory:
+    output:
+        epa_inventory = f"{data_path}us-ghg-inventory-2024-chapter-executive-summary_04-16-2024.pdf"
+    shell:
+        f"""
+        (cd {data_path} && curl -O https://www.epa.gov/system/files/documents/2024-04/us-ghg-inventory-2024-chapter-executive-summary_04-16-2024.pdf)
+        """
+
+rule plot_mauna_loa:
+    input:
+        mauna_loa_data = f"{data_path}co2_mlo_surface-insitu_1_ccgg_DailyData.txt"
+    output:
+        mauna_loa_plot = f"{docs_path}figures/01_introduction/mauna-loa-co2.pgf"
+    script:
+        "scripts/01-introduction-scripts/plot_mauna_loa.py"
+
+rule plot_source_emissions:
+    output:
+        source_emissions_plot = f"{docs_path}figures/01_introduction/emissions-by-source.pgf"
+    script:
+        "scripts/01-introduction-scripts/plot_source_emissions.py"
+
+rule plot_sector_emissions:
+    input:
+        epa_inventory = f"{data_path}us-ghg-inventory-2024-chapter-executive-summary_04-16-2024.pdf"
+    output:
+        sector_emissions_plot = f"{docs_path}figures/01_introduction/emissions-by-sector.pgf"
+    script:
+        "scripts/01-introduction-scripts/plot_sector_emissions.py"
+
+
+rule build_example_dag:
+    params:
+        chapter = "introduction_chapter"
+    input: "Snakefile"
+    output: "introduction_chapter_dag.png"
+    shell: 
+        "snakemake {params.chapter} --dag | dot -Tpng > {output}"
+
+
+rule introduction_chapter:
+    input:
+        dag = "dag.png",
+        example_dag = "introduction_chapter_dag.png",
+        mauna_loa_plot = f"{docs_path}figures/01_introduction/mauna-loa-co2.pgf",
+        source_emissions_plot = f"{docs_path}figures/01_introduction/emissions-by-source.pgf",
+        sector_emissions_plot = f"{docs_path}figures/01_introduction/emissions-by-sector.pgf"
+    output:
+        ch1_log
+    shell:
+        """
+        for file in {input}; do
+            echo $file >> {output}
+        done
+        """
+
+
 #============================BUILD RULE================================
 
 if sys.platform == 'Windows':
     rule build_thesis:
         input: 
             main_tex = f"{docs_path}{output_name}.tex",
+            ch7_log=ch7_log,
             ch5_log=ch5_log,
             ch4_log=ch4_log,
             ch3_log=ch3_log,
             ch2_log=ch2_log,
-            dag = "dag.png"
+            ch1_log=ch1_log,
         output: f"{docs_path}{output_name}.pdf"
         shell:
             f"""
@@ -430,11 +545,12 @@ elif sys.platform in ['darwin', 'linux']:
     rule build_thesis:
         input: 
             main_tex = f"{docs_path}{output_name}.tex",
-            ch5_log = ch5_log,
-            ch4_log = ch4_log,
+            ch7_log=ch7_log,
+            ch5_log=ch5_log,
+            ch4_log=ch4_log,
             ch3_log=ch3_log,
             ch2_log=ch2_log,
-            dag = "dag.png"
+            ch1_log=ch1_log,
         output: f"{docs_path}{output_name}.pdf"
         shell:
             f"""
@@ -446,4 +562,4 @@ rule build_dag:
     output:
         "dag.png"
     shell:
-        "snakemake --dag | dot -Tpng > {output}"
+        "snakemake --rulegraph | dot -Tpng > {output}"