Dockerfile

# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
ARG OWNER=jupyter
ARG BASE_CONTAINER=$OWNER/minimal-notebook
FROM $BASE_CONTAINER

LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"

# Fix: https://github.com/hadolint/hadolint/wiki/DL4006
# Fix: https://github.com/koalaman/shellcheck/wiki/SC3014
SHELL ["/bin/bash", "-o", "pipefail", "-c"]

ARG NB_USER="sagemaker-user"
ARG NB_UID="1000"
ARG NB_GID="100"

ENV NB_USER=$NB_USER \
    NB_UID=$NB_UID \
    NB_GID=$NB_GID \
    HOME=/home/$NB_USER


USER root

# R pre-requisites
RUN apt-get update --yes && \
    apt-get install --yes --no-install-recommends \
    fonts-dejavu \
    unixodbc \
    unixodbc-dev \
    r-cran-rodbc \
    gfortran \
    gcc && \
    apt-get clean && rm -rf /var/lib/apt/lists/*
    
# R packages including IRKernel which gets installed globally.
# r-e1071: dependency of the caret R package
RUN mamba install --quiet --yes \
    'r-base' \
    'r-caret' \
    'r-crayon' \
    'r-devtools' \
    'r-e1071' \
    'r-forecast' \
    'r-hexbin' \
    'r-htmltools' \
    'r-htmlwidgets' \
    'r-irkernel' \
    'r-nycflights13' \
    'r-randomforest' \
    'r-rcurl' \
    'r-reticulate' \
    'r-rmarkdown' \
    'r-rodbc' \
    'r-rsqlite' \
    'r-shiny' \
    'r-tidyverse' \
    'boto3' \
    'sagemaker' \
    'unixodbc' && \
    mamba clean --all -f -y && \
    fix-permissions "${CONDA_DIR}" && \
    fix-permissions "/home/${NB_USER}"


# `r-tidymodels` is not easy to install under arm
RUN set -x && \
    arch=$(uname -m) && \
    if [ "${arch}" == "x86_64" ]; then \
        mamba install --quiet --yes \
            'r-tidymodels' && \
            mamba clean --all -f -y && \
            fix-permissions "${CONDA_DIR}" && \
            fix-permissions "/home/${NB_USER}"; \
    fi;
    
RUN useradd --non-unique --create-home --shell /bin/bash --gid "${NB_GID}" --uid ${NB_UID} "sagemaker-user"

WORKDIR $HOME
USER ${NB_UID}