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Add cross-query kNN distance mode#73

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johnlees merged 4 commits into
mainfrom
knn-query
Jun 16, 2026
Merged

Add cross-query kNN distance mode#73
johnlees merged 4 commits into
mainfrom
knn-query

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@johannahelene

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also made sure completeness are given in the correct format

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Thanks, this all looks good to me!

Could you make that one clippy change, and also merge the main branch in? Then I think good to go here

Comment thread src/io.rs Outdated
}
let Some((genome_id, completeness_str)) = line.split_once('\t') else {
return None;
};

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Would be good to make this clippy change

@codecov

codecov Bot commented May 29, 2026

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Codecov Report

❌ Patch coverage is 93.36493% with 14 lines in your changes missing coverage. Please review.
✅ Project coverage is 91.86%. Comparing base (5612e0c) to head (f7ffb94).

Files with missing lines Patch % Lines
src/distances/mod.rs 91.39% 8 Missing ⚠️
src/lib.rs 92.85% 4 Missing ⚠️
src/io.rs 93.10% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #73      +/-   ##
==========================================
+ Coverage   91.63%   91.86%   +0.22%     
==========================================
  Files          17       17              
  Lines        2964     3121     +157     
==========================================
+ Hits         2716     2867     +151     
- Misses        248      254       +6     

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  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@johannahelene
johannahelene requested a review from johnlees June 16, 2026 11:21
@johnlees
johnlees merged commit 3c4d18c into main Jun 16, 2026
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@johnlees
johnlees deleted the knn-query branch June 16, 2026 12:13
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Add knn option when compare two datasets or distance/ani threshold to report.

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