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4 changes: 2 additions & 2 deletions bcbio/pipeline/disambiguate/run.py
Original file line number Diff line number Diff line change
Expand Up @@ -234,11 +234,11 @@ def main(args):
if nat_cmp(nexthumread.qname,nextmouread.qname) == 0:
humlist.append(nexthumread)
nexthumread = read_next_reads(myHumanFile, humlist) # read more reads with same qname (the function modifies humlist directly)
if nexthumread == None:
if nexthumread is None:
EOFhuman = True
moulist.append(nextmouread)
nextmouread = read_next_reads(myMouseFile, moulist) # read more reads with same qname (the function modifies moulist directly)
if nextmouread == None:
if nextmouread is None:
EOFmouse = True

# perform comparison to check mouse, human or ambiguous
Expand Down