update readme link

Author: lpantano

.github/workflows/run_visium_qc.yaml

@@ -50,7 +50,15 @@ jobs:
         uses: quarto-dev/quarto-actions/setup@v2
 
       - name: Run quality assessment
-        run: quarto render visium/01_quality_assessment/quality_assessment.qmd
+        id: render_qmd
+        run: |
+          if git diff --quiet origin/main -- visium/01_quality_assessment/quality_assessment.qmd; then
+            echo "No changes in quality_assessment.qmd. Skipping render."
+            exit 0
+          else
+            quarto render visium/01_quality_assessment/quality_assessment.qmd
+          fi
+        shell: bash
 
       - name: Deploy HTML to gh-pages
         if: success()

README.md

@@ -42,7 +42,7 @@ Before using any template, go the `VISUM` or `COSMX` folder and:
 
 ![](https://img.shields.io/badge/status-draft-grey) [cosmx/01_quality_assessment/qc.Rmd](cosmx/01_quality_assessment/qc.Rmd) is a template for **COSMX** QC metrics.
 
-![](https://img.shields.io/badge/status-draft-grey) [visium/01_quality_assessment/qc.Rmd](cosmx/01_quality_assessment/quality_assessment.qmd) is a template for **Visium[HD]** QC metrics. [See an example](https://bcbio.github.io/spatial-reports/visium/01_quality_assessment/qc.html).
+![](https://img.shields.io/badge/status-draft-grey) [visium/01_quality_assessment/qc.Rmd](cosmx/01_quality_assessment/quality_assessment.qmd) is a template for **Visium[HD]** QC metrics. [See an example](https://bcbio.github.io/spatial-reports/visium/01_quality_assessment/quality_assessment.html).
 
 ### Clustering and Annotation