Update data from Google Sheets and PubMed

Author: actions-user

_data/news.yml

@@ -161,13 +161,13 @@
   headline: "Daniel's paper [Minimum clinical utility standards for wearable seizure detectors: A simulation study](https://pubmed.ncbi.nlm.nih.gov/38366862/) published in Epilepsia"
 
 - date: 2 Feb 2024
-  headline: "Ruoqi and Wolfgang's [paper about Sleep~Cognition~MRI](https://pubmed.ncbi.nlm.nih.gov/37950486/) is out in SLEEP: [paper](https://bdsp-core.github.io/cdac-downloads/11a-2024-wolfgang-ruoqi-eeg-mri.pdf), [supplement](https://bdsp-core.github.io/cdac-downloads/11b-2024-wolfgang-ruoqi-eeg-mri-supp.docx), [editorial](https://bdsp-core.github.io/cdac-downloads/11c-2024-wolfgang-ruoqi-eeg-mri-editorial.pdf)."
+  headline: "Ruoqi and Wolfgang's [paper about Sleep~Cognition~MRI](https://pubmed.ncbi.nlm.nih.gov/37950486/) is out in SLEEP: [paper](/downloads/11a-2024-wolfgang-ruoqi-eeg-mri.pdf), [supplement](/downloads/11b-2024-wolfgang-ruoqi-eeg-mri-supp.docx), [editorial](/downloads/11c-2024-wolfgang-ruoqi-eeg-mri-editorial.pdf)."
 
 - date: 8 Jan 2024
   headline: "[Kaggle Competition launched!: Harmful Brain Activity Classification. $50K in prizes](https://www.kaggle.com/competitions/hms-harmful-brain-activity-classification)"
 
 - date: 8 Dec 2023
-  headline: "Haoqi's paper [Assessing Risk of Health Outcomes From Brain Activity in Sleep](https://bdsp-core.github.io/cdac-downloads/10-sleepOutcomePrediction.pdf) is out! See also this [nice editorial](https://bdsp-core.github.io/cdac-downloads/10-sleepOutcomePredictionEditorial.pdf)."
+  headline: "Haoqi's paper [Assessing Risk of Health Outcomes From Brain Activity in Sleep](/downloads/10-sleepOutcomePrediction.pdf) is out! See also this [nice editorial](/downloads/10-sleepOutcomePredictionEditorial.pdf)."
 
 - date: 7 Dec 2023
   headline: "New dataset and code!: [Real-Time Segmentation of Burst Suppression Patterns in Critical Care EEG Monitoring](https://bdsp.io/content/bsupp/1.0/) is published on BDSP"

_data/repos.yml

@@ -176,9 +176,9 @@
     in ICU patients — analysis code, deidentification pipeline, and ancillary materials.'
   url: https://github.com/bdsp-core/ICU_SLEEP
   language: Jupyter Notebook
-  stars: 0
+  stars: 1
   forks: 0
-  updated_at: '2026-04-26'
+  updated_at: '2026-04-27'
   visibility: public
   category: Sleep Staging & Sleep AI
   category_slug: sleep-staging-sleep-ai
@@ -318,7 +318,7 @@
   language: Python
   stars: 0
   forks: 0
-  updated_at: '2026-04-23'
+  updated_at: '2026-04-27'
   visibility: private
   category: Sleep Staging & Sleep AI
   category_slug: sleep-staging-sleep-ai
@@ -975,9 +975,9 @@
   description: Inter-rater reliability of EEG-based encephalopathy grading
   url: https://github.com/bdsp-core/EGG-IRR-1.0
   language: MATLAB
-  stars: 0
+  stars: 1
   forks: 0
-  updated_at: '2025-06-05'
+  updated_at: '2026-04-26'
   visibility: public
   category: Delirium, Encephalopathy & CAR-T Neurotoxicity
   category_slug: delirium-encephalopathy-car-t-neurotoxicity
@@ -1499,7 +1499,7 @@
   language: HTML
   stars: 2
   forks: 5
-  updated_at: '2026-04-26'
+  updated_at: '2026-04-27'
   visibility: public
   category: Data Platforms & Infrastructure
   category_slug: data-platforms-infrastructure
@@ -2319,7 +2319,7 @@
   language: Python
   stars: 0
   forks: 0
-  updated_at: '2026-04-24'
+  updated_at: '2026-04-27'
   visibility: private
   category: Data Platforms & Infrastructure
   category_slug: data-platforms-infrastructure
@@ -2331,7 +2331,7 @@
   language: Python
   stars: 1
   forks: 0
-  updated_at: '2026-04-26'
+  updated_at: '2026-04-27'
   visibility: private
   category: Uncategorized
   category_slug: uncategorized
@@ -2349,6 +2349,19 @@
   category_slug: uncategorized
   topics: []
   sort_order: 9
+- name: cdac-downloads
+  description: Downloadable assets (PDFs, slides, checklists, manuscripts) linked
+    from the CDAC / BDSP website
+  url: https://github.com/bdsp-core/cdac-downloads
+  language: Python
+  stars: 0
+  forks: 0
+  updated_at: '2026-04-27'
+  visibility: public
+  category: Uncategorized
+  category_slug: uncategorized
+  topics: []
+  sort_order: 9
 - name: chocolate-bananas
   description: No description provided.
   url: https://github.com/bdsp-core/chocolate-bananas
@@ -2391,7 +2404,7 @@
   language: Python
   stars: 0
   forks: 0
-  updated_at: '2026-04-09'
+  updated_at: '2026-04-27'
   visibility: public
   category: Uncategorized
   category_slug: uncategorized
@@ -2472,10 +2485,10 @@
 - name: nax_llm_batch_processing
   description: No description provided.
   url: https://github.com/bdsp-core/nax_llm_batch_processing
-  language: Jupyter Notebook
+  language: Python
   stars: 0
   forks: 0
-  updated_at: '2026-04-10'
+  updated_at: '2026-04-28'
   visibility: private
   category: Uncategorized
   category_slug: uncategorized

_data/yamlHRV_ECG.yml

@@ -1,3 +1,134 @@
+- title: '"The Harvard-Emory ECG Database."'
+  image: ''
+  description: ''
+  authors: Koscova Z, Li Q, Robichaux C, Junior VM, Ghanta M, Gupta A, Rosand J, Aguirre
+    AD, Reinertsen E, Song S, Hong S, Albert DE, Xue J, Parekh A, Sameni R, Reyna
+    MA, Westover MB, Clifford GD
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2026_Koscova_SciData_41741499.pdf
+    display: 'Scientific data. 2026. 13(1). doi: 10.1038/s41597-026-06861-9. PMID:
+      41741499.'
+  highlight: 0
+- title: '"An Electrocardiogram Foundation Model Built on over 10 Million Recordings."'
+  image: ''
+  description: ''
+  authors: Li J, Aguirre AD, Moura V, Jin J, Liu C, Zhong L, Sun C, Clifford G, Westover
+    MB, Hong S
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2025_Li_NEJMAI_40771651.pdf
+    display: 'NEJM AI. 2025. 2(7). doi: 10.1056/aioa2401033. PMID: 40771651.'
+  highlight: 0
+- title: '"The Harvard-Emory ECG Database."'
+  image: ''
+  description: ''
+  authors: Koscova Z, Li Q, Robichaux C, Junior VM, Ghanta M, Gupta A, Rosand J, Aguirre
+    A, Hong S, Albert DE, Xue J, Parekh A, Sameni R, Reyna MA, Westover MB, Cliford
+    GD
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2025_Koscova_medRxiv_40385443.pdf
+    display: 'medRxiv : the preprint server for health sciences. 2025. doi: 10.1101/2024.09.27.24314503.
+      PMID: 40385443.'
+  highlight: 0
+- title: '"Sleep staging in the ICU with heart rate variability and breathing signals.
+    An exploratory cross-sectional study using deep neural networks."'
+  image: ''
+  description: ''
+  authors: Ganglberger W, Krishnamurthy PV, Quadri SA, Tesh RA, Bucklin AA, Adra N,
+    Da Silva Cardoso M, Leone MJ, Hemmige A, Rajan S, Panneerselvam E, Paixao L, Higgins
+    J, Ayub MA, Shao YP, Coughlin B, Sun H, Ye EM, Cash SS, Thompson BT, Akeju O,
+    Kuller D, Thomas RJ, Westover MB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2023_Ganglberger_FrontNetwPhysiol_36926545.pdf
+    display: 'Frontiers in network physiology. 2023. 3. 1120390. doi: 10.3389/fnetp.2023.1120390.
+      PMID: 36926545.'
+  highlight: 0
+- title: '"Sleep staging from electrocardiography and respiration with deep learning."'
+  image: ''
+  description: ''
+  authors: Sun H, Ganglberger W, Panneerselvam E, Leone MJ, Quadri SA, Goparaju B,
+    Tesh RA, Akeju O, Thomas RJ, Westover MB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2020_Sun_Sleep_31863111.pdf
+    display: 'Sleep. 2020. 43(7). doi: 10.1093/sleep/zsz306. PMID: 31863111.'
+  highlight: 0
+- title: '"Automatic Detection of General Anesthetic-States using ECG-Derived Autonomic
+    Nervous System Features."'
+  image: ''
+  description: ''
+  authors: Polk SL, Kashkooli K, Nagaraj SB, Chamadia S, Murphy JM, Sun H, Westover
+    MB, Barbieri R, Akeju O
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2019_Polk_AnnuIntConfIEEEEngMedBiolSoc_31946297.pdf
+    display: 'Annual International Conference of the IEEE Engineering in Medicine
+      and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual
+      International Conference. 2019. 2019. 2019-2022. doi: 10.1109/EMBC.2019.8857704.
+      PMID: 31946297.'
+  highlight: 0
+- title: '"You Snooze, You Win: the PhysioNet/Computing in Cardiology Challenge 2018."'
+  image: ''
+  description: ''
+  authors: Ghassemi MM, Moody BE, Lehman LH, Song C, Li Q, Sun H, Mark RG, Westover
+    MB, Clifford GD
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2018_Ghassemi_ComputCardiol2010_34796237.pdf
+    display: 'Computing in cardiology. 2018. 45. doi: 10.22489/cinc.2018.049. PMID:
+      34796237.'
+  highlight: 0
+- title: '"ADARRI: a novel method to detect spurious R-peaks in the electrocardiogram
+    for heart rate variability analysis in the intensive care unit."'
+  image: ''
+  description: ''
+  authors: Rebergen DJ, Nagaraj SB, Rosenthal ES, Bianchi MT, van Putten MJAM, Westover
+    MB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2018_Rebergen_JClinMonitComput_28210934.pdf
+    display: 'Journal of clinical monitoring and computing. 2018. 32(1). 53-61. doi:
+      10.1007/s10877-017-9999-9. PMID: 28210934.'
+  highlight: 0
+- title: '"Patient-Specific Classification of ICU Sedation Levels From Heart Rate
+    Variability."'
+  image: ''
+  description: ''
+  authors: Nagaraj SB, Biswal S, Boyle EJ, Zhou DW, McClain LM, Bajwa EK, Quraishi
+    SA, Akeju O, Barbieri R, Purdon PL, Westover MB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2017_Nagaraj_CritCareMed_28441231.pdf
+    display: 'Critical care medicine. 2017. 45(7). e683-e690. doi: 10.1097/CCM.0000000000002364.
+      PMID: 28441231.'
+  highlight: 0
+- title: '"Heart rate variability as a biomarker for sedation depth estimation in
+    ICU patients."'
+  image: ''
+  description: ''
+  authors: Nagaraj SB, Ramaswamy SM, Biswal S, Boyle EJ, Zhou DW, Mcclain LM, Rosenthal
+    ES, Purdon PL, Westover MB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2016_Nagaraj_AnnuIntConfIEEEEngMedBiolSoc_28269712.pdf
+    display: 'Annual International Conference of the IEEE Engineering in Medicine
+      and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual
+      International Conference. 2016. 2016. 6397-6400. doi: 10.1109/EMBC.2016.7592192.
+      PMID: 28269712.'
+  highlight: 0
+- title: '"Automatic Classification of Sedation Levels in ICU Patients Using Heart
+    Rate Variability."'
+  image: ''
+  description: ''
+  authors: Nagaraj SB, McClain LM, Zhou DW, Biswal S, Rosenthal ES, Purdon PL, Westover
+    MB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2016_Nagaraj_CritCareMed_27035240.pdf
+    display: 'Critical care medicine. 2016. 44(9). e782-9. doi: 10.1097/CCM.0000000000001708.
+      PMID: 27035240.'
+  highlight: 0
+- title: '"Classification algorithms for predicting sleepiness and sleep apnea severity."'
+  image: ''
+  description: ''
+  authors: Eiseman NA, Westover MB, Mietus JE, Thomas RJ, Bianchi MT
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2012_Eiseman_JSleepRes_21752133.pdf
+    display: 'Journal of sleep research. 2012. 21(1). 101-12. doi: 10.1111/j.1365-2869.2011.00935.x.
+      PMID: 21752133.'
+  highlight: 0
 - title: '"The Harvard-Emory ECG Database."'
   image: ''
   description: ''

_data/yamlICUEEGterminology.yml

@@ -1,3 +1,100 @@
+- title: '"Evaluating crowdsourcing for ICU EEG annotation: A comparison with expert
+    performance."'
+  image: ''
+  description: ''
+  authors: Kong WY, Nascimento FA, Struck A, Duhaime E, Kapur S, Amorim E, Kapinos
+    G, Rodriguez A, Thomas B, Desai M, Lee JW, Westover MB, Jing J
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2025_Kong_Unknown_40768345.pdf
+    display: 'Epilepsia. 2025. 66(11). 4366-4380. doi: 10.1111/epi.18547. PMID: 40768345.'
+  highlight: 0
+- title: '"Systematic Evaluation of Research Priorities in Critical Care Electroencephalography."'
+  image: ''
+  description: ''
+  authors: Sheikh Z, Selioutski O, Taraschenko O, Gilmore EJ, Westover MB, Cohen AB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2022_Sheikh_JClinNeurophysiol_35066530.pdf
+    display: 'Journal of clinical neurophysiology : official publication of the American
+      Electroencephalographic Society. 2023. 40(5). 426-433. doi: 10.1097/WNP.0000000000000916.
+      PMID: 35066530.'
+  highlight: 0
+- title: '"Using electronic health data to explore effectiveness of ICU EEG and anti-seizure
+    treatment."'
+  image: ''
+  description: ''
+  authors: Amerineni R, Sun H, Lee H, Hsu J, Patorno E, Westover MB, Zafar SF
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2021_Amerineni_AnnClinTranslNeurol_34802196.pdf
+    display: 'Annals of clinical and translational neurology. 2021. 8(12). 2270-2279.
+      doi: 10.1002/acn3.51478. PMID: 34802196.'
+  highlight: 0
+- title: '"American Clinical Neurophysiology Society''s Standardized Critical Care
+    EEG Terminology: 2021 Version."'
+  image: ''
+  description: ''
+  authors: Hirsch LJ, Fong MWK, Leitinger M, LaRoche SM, Beniczky S, Abend NS, Lee
+    JW, Wusthoff CJ, Hahn CD, Westover MB, Gerard EE, Herman ST, Haider HA, Osman
+    G, Rodriguez-Ruiz A, Maciel CB, Gilmore EJ, Fernandez A, Rosenthal ES, Claassen
+    J, Husain AM, Yoo JY, So EL, Kaplan PW, Nuwer MR, van Putten M, Sutter R, Drislane
+    FW, Trinka E, Gaspard N
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2021_Hirsch_JClinNeurophysiol_33475321.pdf
+    display: 'Journal of clinical neurophysiology : official publication of the American
+      Electroencephalographic Society. 2021. 38(1). 1-29. doi: 10.1097/WNP.0000000000000806.
+      PMID: 33475321.'
+  highlight: 0
+- title: '"Development and Feasibility Testing of a Critical Care EEG Monitoring Database
+    for Standardized Clinical Reporting and Multicenter Collaborative Research."'
+  image: ''
+  description: ''
+  authors: Lee JW, LaRoche S, Choi H, Rodriguez Ruiz AA, Fertig E, Politsky JM, Herman
+    ST, Loddenkemper T, Sansevere AJ, Korb PJ, Abend NS, Goldstein JL, Sinha SR, Dombrowski
+    KE, Ritzl EK, Westover MB, Gavvala JR, Gerard EE, Schmitt SE, Szaflarski JP, Ding
+    K, Haas KF, Buchsbaum R, Hirsch LJ, Wusthoff CJ, Hopp JL, Hahn CD
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2016_Lee_JClinNeurophysiol_26943901.pdf
+    display: 'Journal of clinical neurophysiology : official publication of the American
+      Electroencephalographic Society. 2016. 33(2). 133-40. doi: 10.1097/WNP.0000000000000230.
+      PMID: 26943901.'
+  highlight: 0
+- title: '"The standardization debate: A conflation trap in critical care electroencephalography."'
+  image: ''
+  description: ''
+  authors: Ng MC, Gaspard N, Cole AJ, Hoch DB, Cash SS, Bianchi M, O'Rourke DA, Rosenthal
+    ES, Chu CJ, Westover MB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2015_Ng_Seizure_25457454.pdf
+    display: 'Seizure. 2015. 24. 52-8. doi: 10.1016/j.seizure.2014.09.017. PMID: 25457454.'
+  highlight: 0
+- title: '"Interrater agreement for Critical Care EEG Terminology."'
+  image: ''
+  description: ''
+  authors: Gaspard N, Hirsch LJ, LaRoche SM, Hahn CD, Westover MB
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2014_Gaspard_Epilepsia_24888711.pdf
+    display: 'Epilepsia. 2014. 55(9). 1366-73. doi: 10.1111/epi.12653. PMID: 24888711.'
+  highlight: 0
+- title: '"Real-time segmentation and tracking of brain metabolic state in ICU EEG
+    recordings of burst suppression."'
+  image: ''
+  description: ''
+  authors: Westover MB, Ching S, Shafi MM, Cash SS, Brown EN
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2013_Westover_AnnuIntConfIEEEEngMedBiolSoc_24111383.pdf
+    display: 'Annual International Conference of the IEEE Engineering in Medicine
+      and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual
+      International Conference. 2013. 2013. 7108-11. doi: 10.1109/EMBC.2013.6611196.
+      PMID: 24111383.'
+  highlight: 0
+- title: '"Information theoretic quantification of diagnostic uncertainty."'
+  image: ''
+  description: ''
+  authors: Westover MB, Eiseman NA, Cash SS, Bianchi MT
+  link:
+    url: https://bdsp-core.github.io/cdac-downloads/2012_Westover_OpenMedInformJ_23304251.pdf
+    display: 'The open medical informatics journal. 2012. 6. 36-50. doi: 10.2174/1874431101206010036.
+      PMID: 23304251.'
+  highlight: 0
 - title: '"Using electronic health data to explore effectiveness of ICU EEG and anti-seizure
     treatment."'
   image: ''