extending the epochal discrete CTMC model#1135

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jsigao wants to merge 3 commits into

beast-dev:hmc-clockfrom

jsigao:hmc-clock-PR2

Commits on Jun 18, 2022

adding a getBranchRateModelMapping function to the epochal rate model
jsigao
committed
allowing the transition-probability matrix to be computed correctly along a branch when that branch overlaps with both multiple epochal matrices and multiple epochal rates
jsigao
committed
implementing a stochastic mapping function that correctly simulates histories under either an epochal matrix model or an epochal rate model (or both)
jsigao
committed