change gitignore, speed up inference for baseline

Author: ChristianHinge

.gitignore

@@ -1,7 +1,9 @@
 .old/
 conversion/
 CLAUDE.md
-
+outputs/
+*.nii.gz
+v3/
 # Created by https://www.toptal.com/developers/gitignore/api/visualstudiocode,python
 # Edit at https://www.toptal.com/developers/gitignore?templates=visualstudiocode,python
 

src/baseline-inference/inference.py

@@ -45,7 +45,7 @@
 MODEL_PATH = "weights/best_model.pth"
 PATCH_SIZE = (192,192,192)
 SW_BATCH = 2
-OVERLAP = 0.75
+OVERLAP = 0.5
 
 
 # -----------------------------
@@ -92,6 +92,7 @@
         model,
         overlap=OVERLAP,
         mode="gaussian",
+        progress=True
     )
 
 pred = pred.cpu().numpy()[0,0]