Update tmt.config, msstats_converter and isobaric_workflow meta

Author: daichengxin

conf/modules/tmt.config

@@ -6,7 +6,7 @@
 
 process {
     // MSSTATSCONVERTER
-    withName: '.*:TMT:PROTEIN_QUANT:MSSTATS_CONVERTER' {
+    withName: '.*:TMT:MSSTATS_CONVERTER' {
         ext.args    = "-debug $params.protein_quant_debug"
     }
 }

modules/local/openms/isobaric_workflow/meta.yml

@@ -9,6 +9,7 @@ tools:
         Extracts and normalizes isobaric labeling information from an LC-MS/MS experiment.
       homepage: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_IsobaricWorkflow.html
       documentation: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_IsobaricWorkflow.html
+input:
   - mzmls:
       type: file
       description: Input Spectra in mzML format

modules/local/openms/msstats_converter/main.nf

@@ -4,8 +4,8 @@ process MSSTATS_CONVERTER {
     label 'openms'
 
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:2025.04.14' :
-        'ghcr.io/bigbio/openms-tools-thirdparty:2025.04.14' }"
+        'oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:2026.06.06' :
+        'ghcr.io/bigbio/openms-tools-thirdparty:2026.06.06' }"
 
     input:
     path consensusXML