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update openms and rescoring#712

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ypriverol merged 4 commits into
bigbio:devfrom
daichengxin:dev
Jul 11, 2026
Merged

update openms and rescoring#712
ypriverol merged 4 commits into
bigbio:devfrom
daichengxin:dev

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@daichengxin

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the bigbio/quantms branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

Update tmt.config, msstats_converter and isobaric_workflow meta
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@ypriverol ypriverol self-requested a review July 11, 2026 09:49
@ypriverol ypriverol merged commit 584c284 into bigbio:dev Jul 11, 2026
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