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24 changes: 24 additions & 0 deletions README - Copy.md
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# Bioinformatics Bootcamp Special Topics Workshop: **Single Cell RNA-Seq Analysis**
*Presented by UT Health San Antonio BIG Club*

Welcome to the Bioinformatics Bootcamp Advanced topics workshop on **Single Cell RNA-Seq Analysis**. This workshop is designed to teach you how to:
- Perform basic scRNA-Seq data preparation.
- Use manifold learning techniques to analyze cellular relationships in scRNA-Seq data.
- Find and interpret biologically-meaningful patterns in scRNA-Seq data.
- Integrate single cell data from multiple batches, studies, or modalities.
- Present the results of scRNA-Seq analyses with publication-quality figures.

The workshop is broken up into several interactive modules:
1. Introduction to single cell biology and loading single cell datasets
2. Single cell data preparation
3. Manifold learning with single cell datasets
4. Biological interpretation of single cell RNA-Seq
5. Data integration, cell cycle, and other advanced topics in scRNA-Seq analysis
6. Final Project: Identification of clinically-relevant tumor subpopulations

Navigate to the folder for each module to view the relevant scripts, assignments, and lecture materials.

Please read the syllabus (in this directory) for workshop details. **If you haven't already, make sure to enroll by filling out the [online form](https://tiny.cc/single-cell-bootcamp)**

# Example of some R code
`print("Hello world")`