bilby/.github/workflows/unit-tests.yml at main · bilby-dev/bilby · GitHub

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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: Unit testing

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]
  merge_group:
  release:
    types:
      - published

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

env:
  CONDA_PATH: /opt/conda/
  BILBY_ALLOW_PARAMETERS_AS_STATE: FALSE
  SETUPTOOLS_SCM_IGNORE_DUBIOUS_OWNER: 1

jobs:
  build:

    name: ${{ matrix.python.name }} unit tests
    runs-on: ubuntu-latest
    container: ghcr.io/bilby-dev/bilby-python${{ matrix.python.short-version }}:latest
    strategy:
      fail-fast: false
      matrix:
        python:
          - name: Python 3.11
            version: 3.11
            short-version: 311
          - name: Python 3.12
            version: 3.12
            short-version: 312
          - name: Python 3.13
            version: 3.13
            short-version: 313

    steps:
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0
        fetch-tags: true
    - name: Install package
      run: |
        # activate env so that conda list shows the correct environment
        apt-get update
        apt-get install -y gnupg curl
        source $CONDA_PATH/bin/activate python${{ matrix.python.short-version }}
        conda install -c conda-forge -y liblal!=7.7.0 python-lal!=7.7.0
        python -m pip install .
        conda list --show-channel-urls
      shell: bash
    # - name: Run precommits
    #   run: |
    #     pre-commit run --all-files --verbose --show-diff-on-failure
    - name: Run unit tests
      run: |
        python -m pytest --cov=bilby --cov-branch --durations 10 -ra --color yes --cov-report=xml --junitxml=pytest.xml
    - name: Run sampler tests
      run: |
        pytest test/integration/sampler_run_test.py --durations 10 -v
    - name: Publish coverage to Codecov
      uses: codecov/codecov-action@v5
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        files: coverage.xml
        flags: python${{ matrix.python.short-version }}
        slug: bilby-dev/bilby
    - name: Coverage report
      run: python -m coverage report --show-missing
    - name: Upload test results
      if: always()
      uses: actions/upload-artifact@v4
      with:
        name: pytest-${{ matrix.python.short-version }}
        path: pytest.xml

  array-backend:

    name: ${{ matrix.python.name }} array backend (${{ matrix.backend.name }})
    runs-on: ubuntu-latest
    container: ghcr.io/bilby-dev/bilby-python${{ matrix.python.short-version }}:latest
    strategy:
      fail-fast: false
      matrix:
        python:
          - name: Python 3.13
            version: 3.13
            short-version: 313
        backend:
          - name: numpy
            install-args: .
          - name: jax
            install-args: .[jax]
          - name: torch
            install-args: .
    env:
      BILBY_ARRAY_API: 1
      SCIPY_ARRAY_API: 1

    steps:
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0
        fetch-tags: true
    - name: Install package
      run: |
        # activate env so that conda list shows the correct environment
        apt-get update
        apt-get install -y gnupg curl
        source $CONDA_PATH/bin/activate python${{ matrix.python.short-version }}
        conda install -c conda-forge -y liblal!=7.7.0 python-lal!=7.7.0
        python -m pip install ${{ matrix.backend.install-args }}
        python -m pip install orng
        conda list --show-channel-urls
      shell: bash
    - name: Run array-backend unit tests
      run: |
        pytest --array-backend ${{ matrix.backend.name }} --durations 10 --junitxml=pytest-array.xml
    - name: Publish coverage to Codecov
      uses: codecov/codecov-action@v5
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        files: coverage.xml
        flags: python${{ matrix.backend.name }}
        slug: bilby-dev/bilby
    - name: Upload array-backend test results
      if: always()
      uses: actions/upload-artifact@v4
      with:
        name: pytest-array-${{ matrix.python.short-version }}-${{ matrix.backend.name }}
        path: pytest-array.xml