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FastQC: follow-up improvements after the dup/overrepresented memory fix (#182)

Status: Open.

#183 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Jul 3, 2026

Follow up on VEP pick-mode review nits

Status: Open.

#161 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on May 18, 2026

annotate_vep(..., merged=true) omits merged-only columns from table-function/DataFrame schema

Status: Open.

#149 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 25, 2026

cluster(): partitioned execution can hang because output streams wait for all partitions

Status: Open.

#147 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 23, 2026

Match VEP buffer-scoped HGNC_ID propagation for merged RefSeq

Status: Open.

#143 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 13, 2026

Domains issue

VEP-mismatch

Status: Open.

#138 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 8, 2026

inframe_insertion classified instead of protein_altering_variant for complex CDS-boundary insertions

VEP-mismatch

Status: Open.

#120 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 6, 2026

start_retained_variant missing alongside start_lost for frameshifts and CDS-boundary deletions

VEP-mismatch

Status: Open.

#119 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 6, 2026

stop_lost falsely added to frameshift_variant when frameshift extends past original stop codon

VEP-mismatch

Status: Open.

#115 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 6, 2026

HGVSc/HGVS_OFFSET emitted for non-coding indels where VEP produces empty

VEP-mismatch

VEP-more-than-vepVEP investigation neededVEP investigation needed

Status: Open.

#112 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 6, 2026

HGNC_ID: 39 false-positive mismatches from more complete propagation than VEP (LINC03025)

VEP-mismatch

VEP-more-than-vepVEP investigation neededVEP investigation needed

Status: Open.

#108 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 5, 2026

Consolidate build_dedup_query() into bio-formats to eliminate duplicate query logic

Status: Open.

#107 In biodatageeks/datafusion-bio-functions;

· mwiewior opened on Apr 5, 2026