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biodatageeks / datafusion-bio-functions Public

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Add VEP flag_pick_allele_gene and pick_order support#139

Merged

mwiewior merged 17 commits into

masterbiodatageeks/datafusion-bio-functions:masterfrom

feature/vep-flag-pick-allele-genebiodatageeks/datafusion-bio-functions:feature/vep-flag-pick-allele-geneCopy head branch name to clipboard

May 18, 2026

Conversation Commits17 (17)Checks Files changed

Merged

Add VEP flag_pick_allele_gene and pick_order support#139
mwiewior merged 17 commits into
masterfrom
feature/vep-flag-pick-allele-gene

Commits

Commits on Apr 25, 2026

Add VEP pick allele gene support
mwiewior
committed
Align pick allele gene logic with VEP 115
mwiewior
committed
Match VEP PICK output and gene grouping
mwiewior
committed
Wire pick flags into VEP golden benchmark
mwiewior
committed
Align flag_pick_allele_gene with VEP
mwiewior
committed
Use transcript length for VEP pick ranking
mwiewior
committed
Fix VEP CSQ default field padding
mwiewior
committed
Address VEP pick review feedback
mwiewior
committed
Implement VEP pick modes
mwiewior
committed
Update VEP pick OpenSpec progress
mwiewior
committed
Mark VEP pick OpenSpec complete
mwiewior
committed

Commits on May 17, 2026

Fix parquet HGNC propagation in VEP buffers
mwiewior
committed
Preserve VCF order in parquet lookup output
mwiewior
committed

Commits on May 18, 2026

Align VEP input buffer feature scoping
mwiewior
committed
Fix VEP pick allele tie ordering
mwiewior
committed
Match VEP noncoding pick length
mwiewior
committed
Remove unused pick ordering import
mwiewior
committed

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