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Add redb variation cache backend#159

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mwiewior wants to merge 8 commits into
feature/vep-flag-pick-allele-genefrom
feature/redb-kv-cache-backend
Closed

Add redb variation cache backend#159
mwiewior wants to merge 8 commits into
feature/vep-flag-pick-allele-genefrom
feature/redb-kv-cache-backend

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@mwiewior
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Summary

  • add a redb-backed VEP variation cache store/provider, using ReadOnlyDatabase for annotation-time reads
  • share KV lookup execution across fjall/redb and add redb cache-loader support
  • wire CLI/examples/docs for selecting redb and using <cache_dir>/variation.redb

Test Plan

  • cargo check -p datafusion-bio-function-vep --features kv-cache --examples
  • cargo test -p datafusion-bio-function-vep --features kv-cache

@mwiewior mwiewior deleted the branch feature/vep-flag-pick-allele-gene May 18, 2026 12:28
@mwiewior mwiewior closed this May 18, 2026
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