Release v1.1.0 by DylanWelzel · Pull Request #445 · biothings/biothings.api

Commits on May 29, 2025

update the unlist and unlist_incexcl functions

DylanWelzel
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shuchenliu
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add tests for each function

DylanWelzel
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move unlist helper functions outside

DylanWelzel
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add comments for internal helper functions

DylanWelzel
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Improve index error messaging (#351)

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Hide cloud credentials when finding snapshots

DylanWelzel
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added more detailed error logging for when the temporary collection cannot switch

jal347
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fix: :bug: an issue when calling load_json

newgene
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add postgresql collection class

DylanWelzel
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add tests for postgresql collection class

DylanWelzel
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fix import in test

DylanWelzel
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fix imports

DylanWelzel
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fix codacy issues

DylanWelzel
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add sync_snapshots functionality

DylanWelzel
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use keyword args

DylanWelzel
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fix keyword argument

DylanWelzel
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use keyword args in cleanup method

DylanWelzel
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handle undefined environments

DylanWelzel
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handle unregistered environment

DylanWelzel
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update missing environment message

DylanWelzel
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move key error catch for both legacy and current formats

DylanWelzel
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add not found err message

DylanWelzel
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use workers

DylanWelzel
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change sync to validate

DylanWelzel
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update sync to validate in commands

DylanWelzel
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add ignore errors logic

DylanWelzel
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handle delete_snapshots body args

DylanWelzel
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remove f strings from logging messages

DylanWelzel
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handle merge conflict

DylanWelzel
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fix codacy errors

DylanWelzel
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fix line too long in snapshooter

DylanWelzel
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add SnapshotManager method doc strings

DylanWelzel
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add doc strings in snapshot_cleanup

DylanWelzel
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corrected order of checks for temp_collection in switch_collection

jal347
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Fix the logic for table_space assignment

jschaff
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Leverage the findv2 over find due to counting (#366)

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use .get to avoid key error

DylanWelzel
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Apply black formatting to the main repository base (#374)

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Update our CLI tooling initialization and debug messaging (#367)

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Cleanup the cli module imports (#375)

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changed to have query work on an empty body (#378)

jal347
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Remove cgi dependency (#379)

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Add build and index support to the command-line tooling (biothings-cli) (#373)

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Provide manifest validation and improved error messages upon invalid plugin manifests (#371)

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fixed assistantmanager import issue (#383)

jal347
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Modify biothings jsonschema namespace (#370)

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Redirect pip show output to /dev/null (#385)

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build: :arrow_up: upgraded typer package version

newgene
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build: :arrow_up: upgraded tornado package version

newgene
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Update from loader to loaders module (#386)

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Update the loader import path to be absolute (#387)

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Update asyncssh dependency (2.11.0 -> 2.19.0) (#389)

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Plugin directory loading error (#388)

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Suppress INFO logs for elastic_transport.transport. (#390)

everaldorodrigo
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shuchenliu
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Add BulkIndexError exception to the indexer task.

everaldorodrigo
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Use lazy % formatting in logging function

everaldorodrigo
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refactor: :recycle: add an optional logger parameter

newgene
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Data source registration cleanup (#361)

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Re-add the os import to manager module

ctrl-schaff
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Fix mutation in metadata endpoint. (#392)

everaldorodrigo
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Refactor: Improve meta dictionary filtering logic. (#394)

everaldorodrigo
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Set Github Action Tests on Pull Request (#395)

everaldorodrigo
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Upgrade ES to 8.17.0 and python to 3.12. Also fix some tests from branch 1.0.x (#356)

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Validator for Biothings Studio Plugin (#382)

jal347
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setup disable property for basic and advanced plugins

DylanWelzel
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make lowercase to match manifest syntax

DylanWelzel
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fix setting property

DylanWelzel
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CLI index command enhancement(#391)

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Cleanup biothings test infrastructure and discovery (#397)

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build: :building_construction: switch to use pyproject.toml for package building

newgene
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fix: :pencil2: fixed a typo

newgene
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build: :package: updated package version to 1.0.0

newgene
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ci: :construction_worker: fixing github actions for new pyproject.yaml

newgene
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build: :package: fix license field for Python 3.8

newgene
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build: :heavy_minus_sign: remove aiocron from cli dependencies

newgene
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build: :heavy_minus_sign: remove python-dateutil as direct dependency

newgene
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build: :package: switch to use git module intead

newgene
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build: :wrench: remove unused MANUFEST.in

newgene
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build: :coffin: remove old travis.yml

newgene
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build: :coffin: remove unused pre-commit hook

newgene
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Ensure plugin_name is passed as kwarg for cli operation(s)(#400)

ctrl-schaff
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Revert dataplugin module loading (#399)

ctrl-schaff
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fix: :bug: use more compatible elasticsearch_dsl.__versionstr__

newgene
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Move hub commits to inner scope (#403)

ctrl-schaff
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Error handling for the IndexerTask mindex function (#401)

ctrl-schaff
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fix: suppress pydantic ImportError in CLI

newgene
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fix: make psutil required for CLI

newgene
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Various bugfixes and cleanup (#404)

ctrl-schaff
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Remove Deprecated doc_type (#402)

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added keylookup as an optional property to the manifest schema

jal347
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fixed trailing comma on manifest schema

jal347
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Isolate cli job management (#405)

ctrl-schaff
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updated help text for --plugin-name

newgene
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rename CLI option --pluginname to --name

newgene
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various minor fixes in CLI

newgene
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updated dataplugin template readme

newgene
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some coding style fixes

newgene
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minor typing and styling fixes

newgene
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renaming parser.py to avoid conflict with buildin parser module

newgene
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added post_dump_sanity_check as part of the basedumper

jal347
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integrated post_dump_sanity_check into post_dump

jal347
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change how elasticsearch dsl package is imported
shuchenliu
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update displayed dsl version info
shuchenliu
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remove elasticsearch-dsl in dependencies
shuchenliu
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Merge pull request #407 from biothings/upgrade-dsl
shuchenliu
authored

Commits on Jul 31, 2025

Commits on Aug 1, 2025

Commits on Oct 27, 2025

Commits on Oct 28, 2025

Commits on Nov 6, 2025

Add cli configuration application (#418)
ctrl-schaff
authored

Commits on Nov 11, 2025

Commits on Nov 12, 2025

Commits on Nov 13, 2025

Commits on Dec 10, 2025

Commits on Dec 12, 2025

build: :arrow_up: updated orjson for Py3.14 and new torando version
newgene
committed

Commits on Dec 23, 2025

Commits on Dec 24, 2025

Merge pull request #427 from biothings/py314_fix
newgene
authored

Commits on Feb 3, 2026

extend the manifest's uploader and dumper section to use locally defined, customized class
shuchenliu
committed

Commits on Feb 11, 2026

improve BuilderManager api request
DylanWelzel
committed

Commits on Feb 12, 2026

Merge pull request #431 from biothings/custom-uploader
shuchenliu
authored

Commits on Feb 17, 2026

Commits on Feb 24, 2026

Commits on Feb 26, 2026

Commits on Mar 2, 2026

Merge pull request #437 from biothings/build-cleanup
DylanWelzel
authored

Commits on Mar 25, 2026

remove deprecated Google Analytics support and clean up related code
DylanWelzel
committed

Commits on Mar 31, 2026

fix: handle NaN-like values in dict_sweep to prevent ValueError
DylanWelzel
committed

Commits on Apr 7, 2026

fix: update NaN handling in dict_sweep and add tests for _val_to_delete
DylanWelzel
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Commits

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Commits on Oct 28, 2025

Commits on Nov 6, 2025

Commits on Nov 11, 2025