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NAMESPACE
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82 lines (81 loc) · 2.2 KB
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# Generated by roxygen2: do not edit by hand
export(AbunTNIPlot)
export(BayesCluster)
export(BuildLRExprssion)
export(BulidCGnet)
export(CalCellCodis)
export(CalImmInfiltration)
export(CalLRIScore)
export(CalTLSfea)
export(CreateStfObj)
export(DefineTNIregion)
export(FactorEnrichAnalysis)
export(FactorMetagenes)
export(GetGsetSigScore)
export(GroupTNItypes)
export(GsetScore)
export(HPhenoAsso)
export(LabelMapcolor)
export(NMF_bulk_input)
export(Norm01)
export(PhenoAssoFeatures)
export(PlotCellSpot)
export(PredNMFinST)
export(RegFeaEnrich)
export(RunNMFtest)
export(STcoordCheck)
export(SePreprocess)
export(SpotVisualize)
export(TNIClass)
export(TNIscore)
export(msigdb_types)
import(NMF)
importFrom(ROCR,performance)
importFrom(ROCR,prediction)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,PercentageFeatureSet)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunTSNE)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,SCTransform)
importFrom(Seurat,ScaleData)
importFrom(SeuratObject,PackageCheck)
importFrom(cluster,pam)
importFrom(cowplot,plot_grid)
importFrom(doParallel,stopImplicitCluster)
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(fpc,pamk)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,scale_y_reverse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_void)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(igraph,components)
importFrom(igraph,graph_from_data_frame)
importFrom(msigdbr,msigdbr)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(progressr,progressor)
importFrom(progressr,with_progress)
importFrom(progressr,without_progress)
importFrom(scatterpie,geom_scatterpie)
importFrom(survival,Surv)
importFrom(survival,cox.zph)
importFrom(survival,coxph)