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how to warp existing annotations to a new template, using brainglobe-registration #458

Description

@alessandrofelder

Depends on brainglobe/brainglobe-napari-io#118

This should take the form of a "How-to" guide in the diataxis sense.

It should include the required prerequisites:

  • a python environment with brainglobe-registration installed.
  • the new template
  • the desired annotations as a starting point for the new template

And the steps will include~

  • finding the registration map between the old template (with the desired annotations) and the new template
  • applying the registration map to the annotations
  • exporting the annotations (to nifti if you want to use ITK snap for editing them)

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