From a3df3cf2605ea4ef9b952d2b3202255ec222de32 Mon Sep 17 00:00:00 2001 From: Harry Carey Date: Sun, 28 Jun 2026 15:52:17 +0100 Subject: [PATCH 1/3] Document QUINT and VERSO external tools --- docs/source/community/external-tools.md | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/docs/source/community/external-tools.md b/docs/source/community/external-tools.md index 6f27e3bd..34e0acee 100644 --- a/docs/source/community/external-tools.md +++ b/docs/source/community/external-tools.md @@ -6,6 +6,17 @@ developers creating interoperable tools. The BrainGlobe core developers have cre [brainrender](/documentation/brainrender/index) etc.). More recently, members of the community have built their own software that leverages the BrainGlobe ecosystem in some way: +## QUINT +QUINT is a registration pipeline which consists of QuickNII, VisuAlign, and Nutil for Quantification. The QUINT +developers have created a BrainGlobe Atlas Installer. +- [BrainGlobe Atlas Installer](https://github.com/Tevemadar/BrainGlobe-support) +- [Documentation](https://quint-workflow.readthedocs.io/en/latest/QUINTintro.html) +- [Paper](https://doi.org/10.3389/fninf.2019.00075) + +## VERSO +VERSO is an under development all-in-one tool for linear and nonlinear section to atlas registration +- [GitHub repository](https://github.com/LeonardoLupori/verso) + ## Aligning Big Brains & Atlases Aligning Big Brains & Atlases (ABBA) is a FIJI plugin for the registration of 2D brain sections to an atlas. Using the [Python version](https://github.com/BIOP/abba_python) allows users to register their data to any BrainGlobe Atlas. From a787efc508e42dc886c289b288cbc9f9a15d5a2e Mon Sep 17 00:00:00 2001 From: Harry Carey Date: Mon, 29 Jun 2026 09:21:46 +0100 Subject: [PATCH 2/3] Update docs/source/community/external-tools.md Co-authored-by: Adam Tyson --- docs/source/community/external-tools.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/community/external-tools.md b/docs/source/community/external-tools.md index 34e0acee..07a1df72 100644 --- a/docs/source/community/external-tools.md +++ b/docs/source/community/external-tools.md @@ -7,7 +7,7 @@ developers creating interoperable tools. The BrainGlobe core developers have cre software that leverages the BrainGlobe ecosystem in some way: ## QUINT -QUINT is a registration pipeline which consists of QuickNII, VisuAlign, and Nutil for Quantification. The QUINT +QUINT is a registration pipeline which consists of QuickNII, VisuAlign, and Nutil for quantification. The QUINT developers have created a BrainGlobe Atlas Installer. - [BrainGlobe Atlas Installer](https://github.com/Tevemadar/BrainGlobe-support) - [Documentation](https://quint-workflow.readthedocs.io/en/latest/QUINTintro.html) From ab67248392989e8f65e97ee553d70cb3713b863c Mon Sep 17 00:00:00 2001 From: Harry Carey Date: Mon, 29 Jun 2026 09:22:00 +0100 Subject: [PATCH 3/3] Update docs/source/community/external-tools.md Co-authored-by: Adam Tyson --- docs/source/community/external-tools.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/community/external-tools.md b/docs/source/community/external-tools.md index 07a1df72..d472b7a2 100644 --- a/docs/source/community/external-tools.md +++ b/docs/source/community/external-tools.md @@ -14,7 +14,7 @@ developers have created a BrainGlobe Atlas Installer. - [Paper](https://doi.org/10.3389/fninf.2019.00075) ## VERSO -VERSO is an under development all-in-one tool for linear and nonlinear section to atlas registration +VERSO is an all-in-one tool for linear and nonlinear section to atlas registration - [GitHub repository](https://github.com/LeonardoLupori/verso) ## Aligning Big Brains & Atlases