Skip to content

Document QUINT and VERSO external tools #509

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
PolarBean merged 3 commits into from
Jun 29, 2026
Merged

Document QUINT and VERSO external tools #509

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
a3df3cf
Document QUINT and VERSO external tools
PolarBean Jun 28, 2026
a787efc
Update docs/source/community/external-tools.md
PolarBean Jun 29, 2026
ab67248
Update docs/source/community/external-tools.md
PolarBean Jun 29, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
11 changes: 11 additions & 0 deletions docs/source/community/external-tools.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,17 @@ developers creating interoperable tools. The BrainGlobe core developers have cre
[brainrender](/documentation/brainrender/index) etc.). More recently, members of the community have built their own
software that leverages the BrainGlobe ecosystem in some way:

## QUINT
QUINT is a registration pipeline which consists of QuickNII, VisuAlign, and Nutil for quantification. The QUINT
developers have created a BrainGlobe Atlas Installer.
- [BrainGlobe Atlas Installer](https://github.com/Tevemadar/BrainGlobe-support)
- [Documentation](https://quint-workflow.readthedocs.io/en/latest/QUINTintro.html)
- [Paper](https://doi.org/10.3389/fninf.2019.00075)

## VERSO
VERSO is an all-in-one tool for linear and nonlinear section to atlas registration
- [GitHub repository](https://github.com/LeonardoLupori/verso)

## Aligning Big Brains & Atlases
Aligning Big Brains & Atlases (ABBA) is a FIJI plugin for the registration of 2D brain sections to an atlas. Using
the [Python version](https://github.com/BIOP/abba_python) allows users to register their data to any BrainGlobe Atlas.
Expand Down
Loading