Add RMS prize#510
Merged
Merged
Conversation
PolarBean
approved these changes
Jun 30, 2026
Member
Unexpected failing examples (1):
api_examples_source/brainglobe_atlasapi_example.py failed leaving traceback:
Traceback (most recent call last):
File "/home/runner/work/brainglobe.github.io/brainglobe.github.io/docs/source/api_examples_source/brainglobe_atlasapi_example.py", line 35, in <module>
atlas = BrainGlobeAtlas("allen_mouse_100um", check_latest=False)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/work/brainglobe.github.io/brainglobe.github.io/docs/downloads/brainglobe-atlasapi/brainglobe_atlasapi/bg_atlas.py", line 116, in __init__
super().__init__(self.brainglobe_dir / self.local_full_name)
File "/home/runner/work/brainglobe.github.io/brainglobe.github.io/docs/downloads/brainglobe-atlasapi/brainglobe_atlasapi/core.py", line 95, in __init__
self._template_pyramid_level = _determine_pyramid_level(
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/work/brainglobe.github.io/brainglobe.github.io/docs/downloads/brainglobe-atlasapi/brainglobe_atlasapi/core.py", line 47, in _determine_pyramid_level
scales = metadata.coordinateTransformations[0].scale[-3:]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'TransformSequence' object has no attribute 'scale'
-------------------------------------------------------------------------------It seems the new version of the api is causing the example build to fail @IgorTatarnikov It's unrelated to this PR so ive approved it regardless |
Member
Author
|
I assume this is #508? |
Member
|
Different, #508's traceback is about missing meshes |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Shameless self-promotion, but it seems like it fits within this section.