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Pull requests: cBioPortal/cbioportal-core

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Pull requests list

Link out to the cbio docs in cbio-core README
#154 opened May 18, 2026 by jamesqo Contributor Loading…
adjustments and fixes to derived table script bug Something isn't working enhancement New feature or request
#153 opened May 10, 2026 by sheridancbio Contributor Loading…
(WIP) docs: update core docs for ClickHouse-only rfc100
#148 opened May 6, 2026 by jamesqo Contributor Loading…
Add grouped validation summary to stderr output
#142 opened Apr 16, 2026 by DanielSebagala Loading…
Update cbioportalImporter.py
#133 opened Mar 31, 2026 by DheerajRawandhe Loading…
1
Raise an error if timeline values are duplicated
#129 opened Mar 26, 2026 by oplantalech Contributor Loading…
1
2
Hackathon: update resource file validation to support the new resource data model
#120 opened Mar 11, 2026 by rmadupuri Contributor Loading…
[Hackathon] Change ImportResourceData to use updated resource_node schema
#119 opened Mar 11, 2026 by jamesqo Contributor Loading…
DRAFT - Add scripts to support ClickHouse flow for cmo-pipelines
#117 opened Mar 4, 2026 by jamesqo Contributor • Draft
8
Add validator checks for data_gene_panel_matrix vs _sequenced case list
#114 opened Feb 24, 2026 by rujuthaa Loading…
fix: allow ncbi_build override in meta_study.txt (#98)
#112 opened Feb 23, 2026 by Yash-Kunwar Loading…
Add support for updating type_of_cancer table with latest data from OncoTree
#110 opened Feb 12, 2026 by jamesqo Contributor • Draft
Approach 1: support multiple data files in data_filename attribute
#109 opened Feb 11, 2026 by jamesqo Contributor • Draft
feat: Add duplicate SAMPLE_ID validation for timeline files (cBioPort…
#108 opened Jan 28, 2026 by hetanshee Loading…
1
fix SyntaxWarning: invalid escape sequence '\s'
#88 opened Jun 27, 2025 by codeforkjeff Loading…
Add command to patch study meta data
#68 opened Nov 27, 2024 by forus Contributor Loading…
Add a script to filter mutations in a MAF file
#66 opened Nov 1, 2024 by forus Contributor Loading…
Validator update: only allow SOMATIC or GERMLINE values for SV_Status column
#64 opened Oct 28, 2024 by oplantalech Contributor Loading…
3
Add release drafter to cbioportal-core
#50 opened Jun 25, 2024 by dippindots Collaborator Loading…
Speed up CnaEvent lookup during import DO NOT MERGE This is not yet ready for merge enhancement New feature or request
#25 opened Mar 15, 2024 by sheridancbio Contributor Loading…
2
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