Skip to content

Commit cefb068

Browse files
authored
Merge pull request #2296 from cBioPortal/Methyl_1
Added Methylation 450k batch1
2 parents db2f800 + 7289bdd commit cefb068

4 files changed

Lines changed: 26 additions & 0 deletions

File tree

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,6 @@
1+
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
2+
stable_id: acc_tcga_pan_can_atlas_2018_methylation_all
3+
case_list_name: Samples with methylation data
4+
case_list_description: Samples with methylation data (79 samples)
5+
case_list_category: all_cases_with_methylation_data
6+
case_list_ids: TCGA-OR-A5J1-01 TCGA-OR-A5J2-01 TCGA-OR-A5J3-01 TCGA-OR-A5J4-01 TCGA-OR-A5J5-01 TCGA-OR-A5J6-01 TCGA-OR-A5J7-01 TCGA-OR-A5J8-01 TCGA-OR-A5J9-01 TCGA-OR-A5JA-01 TCGA-OR-A5JB-01 TCGA-OR-A5JC-01 TCGA-OR-A5JD-01 TCGA-OR-A5JE-01 TCGA-OR-A5JF-01 TCGA-OR-A5JG-01 TCGA-OR-A5JI-01 TCGA-OR-A5JJ-01 TCGA-OR-A5JK-01 TCGA-OR-A5JL-01 TCGA-OR-A5JM-01 TCGA-OR-A5JO-01 TCGA-OR-A5JP-01 TCGA-OR-A5JQ-01 TCGA-OR-A5JR-01 TCGA-OR-A5JS-01 TCGA-OR-A5JT-01 TCGA-OR-A5JV-01 TCGA-OR-A5JW-01 TCGA-OR-A5JX-01 TCGA-OR-A5JY-01 TCGA-OR-A5JZ-01 TCGA-OR-A5K0-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5K3-01 TCGA-OR-A5K4-01 TCGA-OR-A5K5-01 TCGA-OR-A5K6-01 TCGA-OR-A5K8-01 TCGA-OR-A5K9-01 TCGA-OR-A5KO-01 TCGA-OR-A5KT-01 TCGA-OR-A5KU-01 TCGA-OR-A5KV-01 TCGA-OR-A5KW-01 TCGA-OR-A5KX-01 TCGA-OR-A5KY-01 TCGA-OR-A5KZ-01 TCGA-OR-A5L3-01 TCGA-OR-A5L4-01 TCGA-OR-A5L5-01 TCGA-OR-A5L6-01 TCGA-OR-A5L8-01 TCGA-OR-A5L9-01 TCGA-OR-A5LA-01 TCGA-OR-A5LB-01 TCGA-OR-A5LC-01 TCGA-OR-A5LD-01 TCGA-OR-A5LE-01 TCGA-OR-A5LG-01 TCGA-OR-A5LH-01 TCGA-OR-A5LJ-01 TCGA-OR-A5LK-01 TCGA-OR-A5LL-01 TCGA-OR-A5LM-01 TCGA-OR-A5LN-01 TCGA-OR-A5LO-01 TCGA-OR-A5LP-01 TCGA-OR-A5LR-01 TCGA-OR-A5LS-01 TCGA-OR-A5LT-01 TCGA-OU-A5PI-01 TCGA-P6-A5OF-01 TCGA-PA-A5YG-01 TCGA-PK-A5H8-01 TCGA-PK-A5H9-01 TCGA-PK-A5HA-01 TCGA-PK-A5HB-01
Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,6 @@
1+
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
2+
stable_id: acc_tcga_pan_can_atlas_2018_methylation_hm450
3+
case_list_name: Samples with methylation data (HM450)
4+
case_list_description: Samples with methylation (HM450) data (79 samples)
5+
case_list_category: all_cases_with_methylation_data
6+
case_list_ids: TCGA-OR-A5J1-01 TCGA-OR-A5J2-01 TCGA-OR-A5J3-01 TCGA-OR-A5J4-01 TCGA-OR-A5J5-01 TCGA-OR-A5J6-01 TCGA-OR-A5J7-01 TCGA-OR-A5J8-01 TCGA-OR-A5J9-01 TCGA-OR-A5JA-01 TCGA-OR-A5JB-01 TCGA-OR-A5JC-01 TCGA-OR-A5JD-01 TCGA-OR-A5JE-01 TCGA-OR-A5JF-01 TCGA-OR-A5JG-01 TCGA-OR-A5JI-01 TCGA-OR-A5JJ-01 TCGA-OR-A5JK-01 TCGA-OR-A5JL-01 TCGA-OR-A5JM-01 TCGA-OR-A5JO-01 TCGA-OR-A5JP-01 TCGA-OR-A5JQ-01 TCGA-OR-A5JR-01 TCGA-OR-A5JS-01 TCGA-OR-A5JT-01 TCGA-OR-A5JV-01 TCGA-OR-A5JW-01 TCGA-OR-A5JX-01 TCGA-OR-A5JY-01 TCGA-OR-A5JZ-01 TCGA-OR-A5K0-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5K3-01 TCGA-OR-A5K4-01 TCGA-OR-A5K5-01 TCGA-OR-A5K6-01 TCGA-OR-A5K8-01 TCGA-OR-A5K9-01 TCGA-OR-A5KO-01 TCGA-OR-A5KT-01 TCGA-OR-A5KU-01 TCGA-OR-A5KV-01 TCGA-OR-A5KW-01 TCGA-OR-A5KX-01 TCGA-OR-A5KY-01 TCGA-OR-A5KZ-01 TCGA-OR-A5L3-01 TCGA-OR-A5L4-01 TCGA-OR-A5L5-01 TCGA-OR-A5L6-01 TCGA-OR-A5L8-01 TCGA-OR-A5L9-01 TCGA-OR-A5LA-01 TCGA-OR-A5LB-01 TCGA-OR-A5LC-01 TCGA-OR-A5LD-01 TCGA-OR-A5LE-01 TCGA-OR-A5LG-01 TCGA-OR-A5LH-01 TCGA-OR-A5LJ-01 TCGA-OR-A5LK-01 TCGA-OR-A5LL-01 TCGA-OR-A5LM-01 TCGA-OR-A5LN-01 TCGA-OR-A5LO-01 TCGA-OR-A5LP-01 TCGA-OR-A5LR-01 TCGA-OR-A5LS-01 TCGA-OR-A5LT-01 TCGA-OU-A5PI-01 TCGA-P6-A5OF-01 TCGA-PA-A5YG-01 TCGA-PK-A5H8-01 TCGA-PK-A5H9-01 TCGA-PK-A5HA-01 TCGA-PK-A5HB-01
Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,3 @@
1+
version https://git-lfs.github.com/spec/v1
2+
oid sha256:2f0434c269366b251c1e95f2e8c1d3b6cdcf8a44588e2ab4ef70ea1b142622ec
3+
size 305006218
Lines changed: 11 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
1+
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
2+
genetic_alteration_type: GENERIC_ASSAY
3+
generic_assay_type: METHYLATION
4+
datatype: LIMIT-VALUE
5+
stable_id: methylation_hm450
6+
profile_name: Methylation (HM450)
7+
profile_description: Methylation beta-values (HM450 platform). For genes with multiple methylation probes, the probe least correlated with expression is selected.
8+
data_filename: data_methylation_hm450.txt
9+
show_profile_in_analysis_tab: true
10+
value_sort_order: DESC
11+
generic_entity_meta_properties: NAME,DESCRIPTION,TRANSCRIPT_ID

0 commit comments

Comments
 (0)