Merge pull request #2296 from cBioPortal/Methyl_1

Added Methylation 450k batch1

Author: Rima-Waleed

public/acc_tcga_pan_can_atlas_2018/case_lists/cases_methylation_all.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: acc_tcga_pan_can_atlas_2018
+stable_id: acc_tcga_pan_can_atlas_2018_methylation_all
+case_list_name: Samples with methylation data
+case_list_description: Samples with methylation data (79 samples)
+case_list_category: all_cases_with_methylation_data
+case_list_ids: TCGA-OR-A5J1-01	TCGA-OR-A5J2-01	TCGA-OR-A5J3-01	TCGA-OR-A5J4-01	TCGA-OR-A5J5-01	TCGA-OR-A5J6-01	TCGA-OR-A5J7-01	TCGA-OR-A5J8-01	TCGA-OR-A5J9-01	TCGA-OR-A5JA-01	TCGA-OR-A5JB-01	TCGA-OR-A5JC-01	TCGA-OR-A5JD-01	TCGA-OR-A5JE-01	TCGA-OR-A5JF-01	TCGA-OR-A5JG-01	TCGA-OR-A5JI-01	TCGA-OR-A5JJ-01	TCGA-OR-A5JK-01	TCGA-OR-A5JL-01	TCGA-OR-A5JM-01	TCGA-OR-A5JO-01	TCGA-OR-A5JP-01	TCGA-OR-A5JQ-01	TCGA-OR-A5JR-01	TCGA-OR-A5JS-01	TCGA-OR-A5JT-01	TCGA-OR-A5JV-01	TCGA-OR-A5JW-01	TCGA-OR-A5JX-01	TCGA-OR-A5JY-01	TCGA-OR-A5JZ-01	TCGA-OR-A5K0-01	TCGA-OR-A5K1-01	TCGA-OR-A5K2-01	TCGA-OR-A5K3-01	TCGA-OR-A5K4-01	TCGA-OR-A5K5-01	TCGA-OR-A5K6-01	TCGA-OR-A5K8-01	TCGA-OR-A5K9-01	TCGA-OR-A5KO-01	TCGA-OR-A5KT-01	TCGA-OR-A5KU-01	TCGA-OR-A5KV-01	TCGA-OR-A5KW-01	TCGA-OR-A5KX-01	TCGA-OR-A5KY-01	TCGA-OR-A5KZ-01	TCGA-OR-A5L3-01	TCGA-OR-A5L4-01	TCGA-OR-A5L5-01	TCGA-OR-A5L6-01	TCGA-OR-A5L8-01	TCGA-OR-A5L9-01	TCGA-OR-A5LA-01	TCGA-OR-A5LB-01	TCGA-OR-A5LC-01	TCGA-OR-A5LD-01	TCGA-OR-A5LE-01	TCGA-OR-A5LG-01	TCGA-OR-A5LH-01	TCGA-OR-A5LJ-01	TCGA-OR-A5LK-01	TCGA-OR-A5LL-01	TCGA-OR-A5LM-01	TCGA-OR-A5LN-01	TCGA-OR-A5LO-01	TCGA-OR-A5LP-01	TCGA-OR-A5LR-01	TCGA-OR-A5LS-01	TCGA-OR-A5LT-01	TCGA-OU-A5PI-01	TCGA-P6-A5OF-01	TCGA-PA-A5YG-01	TCGA-PK-A5H8-01	TCGA-PK-A5H9-01	TCGA-PK-A5HA-01	TCGA-PK-A5HB-01

public/acc_tcga_pan_can_atlas_2018/case_lists/cases_methylation_hm450.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: acc_tcga_pan_can_atlas_2018
+stable_id: acc_tcga_pan_can_atlas_2018_methylation_hm450
+case_list_name: Samples with methylation data (HM450)
+case_list_description: Samples with methylation (HM450) data (79 samples)
+case_list_category: all_cases_with_methylation_data
+case_list_ids: TCGA-OR-A5J1-01	TCGA-OR-A5J2-01	TCGA-OR-A5J3-01	TCGA-OR-A5J4-01	TCGA-OR-A5J5-01	TCGA-OR-A5J6-01	TCGA-OR-A5J7-01	TCGA-OR-A5J8-01	TCGA-OR-A5J9-01	TCGA-OR-A5JA-01	TCGA-OR-A5JB-01	TCGA-OR-A5JC-01	TCGA-OR-A5JD-01	TCGA-OR-A5JE-01	TCGA-OR-A5JF-01	TCGA-OR-A5JG-01	TCGA-OR-A5JI-01	TCGA-OR-A5JJ-01	TCGA-OR-A5JK-01	TCGA-OR-A5JL-01	TCGA-OR-A5JM-01	TCGA-OR-A5JO-01	TCGA-OR-A5JP-01	TCGA-OR-A5JQ-01	TCGA-OR-A5JR-01	TCGA-OR-A5JS-01	TCGA-OR-A5JT-01	TCGA-OR-A5JV-01	TCGA-OR-A5JW-01	TCGA-OR-A5JX-01	TCGA-OR-A5JY-01	TCGA-OR-A5JZ-01	TCGA-OR-A5K0-01	TCGA-OR-A5K1-01	TCGA-OR-A5K2-01	TCGA-OR-A5K3-01	TCGA-OR-A5K4-01	TCGA-OR-A5K5-01	TCGA-OR-A5K6-01	TCGA-OR-A5K8-01	TCGA-OR-A5K9-01	TCGA-OR-A5KO-01	TCGA-OR-A5KT-01	TCGA-OR-A5KU-01	TCGA-OR-A5KV-01	TCGA-OR-A5KW-01	TCGA-OR-A5KX-01	TCGA-OR-A5KY-01	TCGA-OR-A5KZ-01	TCGA-OR-A5L3-01	TCGA-OR-A5L4-01	TCGA-OR-A5L5-01	TCGA-OR-A5L6-01	TCGA-OR-A5L8-01	TCGA-OR-A5L9-01	TCGA-OR-A5LA-01	TCGA-OR-A5LB-01	TCGA-OR-A5LC-01	TCGA-OR-A5LD-01	TCGA-OR-A5LE-01	TCGA-OR-A5LG-01	TCGA-OR-A5LH-01	TCGA-OR-A5LJ-01	TCGA-OR-A5LK-01	TCGA-OR-A5LL-01	TCGA-OR-A5LM-01	TCGA-OR-A5LN-01	TCGA-OR-A5LO-01	TCGA-OR-A5LP-01	TCGA-OR-A5LR-01	TCGA-OR-A5LS-01	TCGA-OR-A5LT-01	TCGA-OU-A5PI-01	TCGA-P6-A5OF-01	TCGA-PA-A5YG-01	TCGA-PK-A5H8-01	TCGA-PK-A5H9-01	TCGA-PK-A5HA-01	TCGA-PK-A5HB-01

public/acc_tcga_pan_can_atlas_2018/data_methylation_hm450.txt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2f0434c269366b251c1e95f2e8c1d3b6cdcf8a44588e2ab4ef70ea1b142622ec
+size 305006218

public/acc_tcga_pan_can_atlas_2018/meta_methylation_hm450.txt

@@ -0,0 +1,11 @@
+cancer_study_identifier: acc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: METHYLATION
+datatype: LIMIT-VALUE
+stable_id: methylation_hm450
+profile_name: Methylation (HM450)
+profile_description: Methylation beta-values (HM450 platform). For genes with multiple methylation probes, the probe least correlated with expression is selected.
+data_filename: data_methylation_hm450.txt
+show_profile_in_analysis_tab: true
+value_sort_order: DESC
+generic_entity_meta_properties: NAME,DESCRIPTION,TRANSCRIPT_ID