April/May Public Studies

public/gist_msk_2025/case_lists/cases_all.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: gist_msk_2025
+stable_id: gist_msk_2025_all
+case_list_name: All samples
+case_list_description: All samples (183 samples)
+case_list_category: all_cases_in_study
+case_list_ids: C-FXFWPL-L005-d	C-PF6D4D-L011-d10	C-9VT4H3-L008-d03	C-0VPHTC-L004-d	C-56E5E1-L001-d	P-0016265-T01-IM6	C-56E5E1-L002-d	P-0025754-T02-IM6	C-56E5E1-L004-d	P-0012403-T01-IM5	P-0045145-T02-IM7	C-PF6D4D-L003-d02	C-PF6D4D-L002-d	C-9VT4H3-L009-d04	C-LDL966-L004-d	C-0VPHTC-L003-d	C-J78RL6-L004-d	P-0043409-T01-IM6	P-0028553-T02-IM6	P-0019042-T04-IM6	C-C20WUD-L006-d03	P-0019042-T02-IM6	C-PF6D4D-L005-d04	C-H8TFUP-L006-d02	C-H8TFUP-L004-d	P-0025754-T04-IM6	P-0012459-T01-IM5	C-LTL8WH-L006-d02	C-J78RL6-L001-d	C-PF6D4D-L008-d07	C-U2DE8W-L001-d	C-DACC7T-L004-d	C-J78RL6-L003-d	C-U2DE8W-L002-d	P-0007702-T01-IM5	C-DACC7T-L003-d	C-DV6T1T-L001-d	C-P0WJ84-L002-d	C-H8TFUP-L003-d	C-DV6T1T-L002-d	C-LNNRMD-L005-d	C-J6WHA7-L002-d	C-C9VNYJ-L004-d	C-FXFWPL-L008-d03	C-P0WJ84-L004-d	P-0014184-T03-IM6	C-PF6D4D-L007-d06	C-ADX477-L005-d	C-PF6D4D-L006-d05	C-LTL8WH-L003-d	P-0044303-T01-IM6	C-CCDLHX-L001-d	C-CCDLHX-L002-d	C-C9VNYJ-L002-d	C-0VPHTC-L009-d04	C-CU7AUR-L008-d	C-P0WJ84-L003-d	P-0024909-T02-IM6	C-KDW0TJ-L001-d	C-DV6T1T-L003-d	P-0024909-T01-IM6	C-DV6T1T-L004-d	P-0045969-T01-IM6	C-C9VNYJ-L006-d	C-CCDLHX-L008-d05	C-0VPHTC-L008-d03	C-ADX477-L009-d03	P-0045969-T02-IM7	P-0044303-T02-IM7	C-ADX477-L008-d02	C-9VT4H3-L004-d	C-9VT4H3-L003-d	P-0026906-T03-IM6	C-MTU93R-L006-d	C-LTL8WH-L004-d	C-5AMKK1-L003-d	C-ADX477-L006-d	C-MTU93R-L005-d	C-1PFWH3-L001-d	C-KDW0TJ-L002-d	C-PF6D4D-L010-d09	C-1PFWH3-L002-d	C-1PFWH3-L004-d	P-0025934-T01-IM6	C-J6WHA7-L001-d	P-0026214-T02-IM6	C-PF6D4D-L001-d	P-0014184-T04-IM6	C-U2DE8W-L005-d02	P-0026906-T02-IM6	C-MTU93R-L002-d	C-P0WJ84-L006-d03	P-0007702-T02-IM6	C-C20WUD-L007-d04	C-FXFWPL-L002-d	C-CCDLHX-L006-d03	P-0040627-T01-IH3	C-J6WHA7-L004-d	C-U2DE8W-L007-d04	C-CCDLHX-L007-d04	P-0050110-T02-IM6	P-0026214-T01-IM6	C-ADX477-L010-d04	C-FXFWPL-L004-d	C-56E5E1-L003-d	P-0026679-T02-IM6	C-YN77UU-L007-d	C-H8TFUP-L001-d	C-DACC7T-L006-d	C-0VPHTC-L005-d	C-0VPHTC-L002-d	C-CCDLHX-L004-d	C-DACC7T-L005-d	C-LDL966-L005-d	C-LTL8WH-L007-d03	C-9VT4H3-L007-d02	C-CCDLHX-L009-d06	P-0043117-T01-IM6	P-0045145-T01-IM6	C-J6WHA7-L003-d	C-CCDLHX-L005-d02	C-ADX477-L011-d05	C-YN77UU-L013-d	C-J78RL6-L005-d	C-J78RL6-L002-d	C-FXFWPL-L009-d04	C-C9VNYJ-L005-d	P-0014184-T02-IM6	P-0026679-T01-IM6	C-H8TFUP-L005-d	C-H8TFUP-L002-d	C-0VPHTC-L007-d02	P-0029072-T02-IM6	P-0019948-T02-IM6	C-C20WUD-L002-d	C-CU7AUR-L004-d	C-LTL8WH-L002-d	C-C9VNYJ-L003-d	C-YN77UU-L015-d	C-PF6D4D-L009-d08	P-0026214-T03-IM6	P-0050110-T01-IM6	C-9VT4H3-L006-d	C-MTU93R-L008-d02	C-56E5E1-L005-d02	C-PF6D4D-L004-d03	C-ADX477-L004-d	C-LDL966-L003-d	C-9VT4H3-L005-d	C-LDL966-L002-d	C-LTL8WH-L005-d	C-ADX477-L003-d	P-0025754-T03-IM6	C-U2DE8W-L008-d05	C-P0WJ84-L001-d	C-CCDLHX-L003-d	C-LDL966-L001-d	C-C20WUD-L005-d02	C-YN77UU-L008-d	C-9VT4H3-L002-d	C-U2DE8W-L003-d	C-KDW0TJ-L003-d	P-0012459-T02-IM6	C-ADX477-L007-d	C-C20WUD-L003-d	C-LNNRMD-L006-d	C-1PFWH3-L003-d	P-0028553-T03-IM6	C-U2DE8W-L006-d03	C-5AMKK1-L002-d	P-0037280-T01-IM6	P-0019042-T03-IM6	C-FXFWPL-L003-d	C-CCDLHX-L010-d07	C-MTU93R-L004-d	C-MTU93R-L003-d	C-LNNRMD-L003-d	P-0028553-T01-IM6	C-P0WJ84-L005-d02	C-C20WUD-L004-d	C-U2DE8W-L004-d	C-FXFWPL-L007-d02	C-LNNRMD-L007-d

public/gist_msk_2025/case_lists/cases_cna.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: gist_msk_2025
+stable_id: gist_msk_2025_cna
+case_list_name: Samples with CNA data
+case_list_description: Samples with CNA data (183 samples)
+case_list_category: all_cases_with_cna_data
+case_list_ids: C-FXFWPL-L005-d	C-PF6D4D-L011-d10	C-9VT4H3-L008-d03	C-0VPHTC-L004-d	C-56E5E1-L001-d	P-0016265-T01-IM6	C-56E5E1-L002-d	P-0025754-T02-IM6	C-56E5E1-L004-d	P-0012403-T01-IM5	P-0045145-T02-IM7	C-PF6D4D-L003-d02	C-PF6D4D-L002-d	C-9VT4H3-L009-d04	C-LDL966-L004-d	C-0VPHTC-L003-d	C-J78RL6-L004-d	P-0043409-T01-IM6	P-0028553-T02-IM6	P-0019042-T04-IM6	C-C20WUD-L006-d03	P-0019042-T02-IM6	C-PF6D4D-L005-d04	C-H8TFUP-L006-d02	C-H8TFUP-L004-d	P-0025754-T04-IM6	P-0012459-T01-IM5	C-LTL8WH-L006-d02	C-J78RL6-L001-d	C-PF6D4D-L008-d07	C-U2DE8W-L001-d	C-DACC7T-L004-d	C-J78RL6-L003-d	C-U2DE8W-L002-d	P-0007702-T01-IM5	C-DACC7T-L003-d	C-DV6T1T-L001-d	C-P0WJ84-L002-d	C-H8TFUP-L003-d	C-DV6T1T-L002-d	C-LNNRMD-L005-d	C-J6WHA7-L002-d	C-C9VNYJ-L004-d	C-FXFWPL-L008-d03	C-P0WJ84-L004-d	P-0014184-T03-IM6	C-PF6D4D-L007-d06	C-ADX477-L005-d	C-PF6D4D-L006-d05	C-LTL8WH-L003-d	P-0044303-T01-IM6	C-CCDLHX-L001-d	C-CCDLHX-L002-d	C-C9VNYJ-L002-d	C-0VPHTC-L009-d04	C-CU7AUR-L008-d	C-P0WJ84-L003-d	P-0024909-T02-IM6	C-KDW0TJ-L001-d	C-DV6T1T-L003-d	P-0024909-T01-IM6	C-DV6T1T-L004-d	P-0045969-T01-IM6	C-C9VNYJ-L006-d	C-CCDLHX-L008-d05	C-0VPHTC-L008-d03	C-ADX477-L009-d03	P-0045969-T02-IM7	P-0044303-T02-IM7	C-ADX477-L008-d02	C-9VT4H3-L004-d	C-9VT4H3-L003-d	P-0026906-T03-IM6	C-MTU93R-L006-d	C-LTL8WH-L004-d	C-5AMKK1-L003-d	C-ADX477-L006-d	C-MTU93R-L005-d	C-1PFWH3-L001-d	C-KDW0TJ-L002-d	C-PF6D4D-L010-d09	C-1PFWH3-L002-d	C-1PFWH3-L004-d	P-0025934-T01-IM6	C-J6WHA7-L001-d	P-0026214-T02-IM6	C-PF6D4D-L001-d	P-0014184-T04-IM6	C-U2DE8W-L005-d02	P-0026906-T02-IM6	C-MTU93R-L002-d	C-P0WJ84-L006-d03	P-0007702-T02-IM6	C-C20WUD-L007-d04	C-FXFWPL-L002-d	C-CCDLHX-L006-d03	P-0040627-T01-IH3	C-J6WHA7-L004-d	C-U2DE8W-L007-d04	C-CCDLHX-L007-d04	P-0050110-T02-IM6	P-0026214-T01-IM6	C-ADX477-L010-d04	C-FXFWPL-L004-d	C-56E5E1-L003-d	P-0026679-T02-IM6	C-YN77UU-L007-d	C-H8TFUP-L001-d	C-DACC7T-L006-d	C-0VPHTC-L005-d	C-0VPHTC-L002-d	C-CCDLHX-L004-d	C-DACC7T-L005-d	C-LDL966-L005-d	C-LTL8WH-L007-d03	C-9VT4H3-L007-d02	C-CCDLHX-L009-d06	P-0043117-T01-IM6	P-0045145-T01-IM6	C-J6WHA7-L003-d	C-CCDLHX-L005-d02	C-ADX477-L011-d05	C-YN77UU-L013-d	C-J78RL6-L005-d	C-J78RL6-L002-d	C-FXFWPL-L009-d04	C-C9VNYJ-L005-d	P-0014184-T02-IM6	P-0026679-T01-IM6	C-H8TFUP-L005-d	C-H8TFUP-L002-d	C-0VPHTC-L007-d02	P-0029072-T02-IM6	P-0019948-T02-IM6	C-C20WUD-L002-d	C-CU7AUR-L004-d	C-LTL8WH-L002-d	C-C9VNYJ-L003-d	C-YN77UU-L015-d	C-PF6D4D-L009-d08	P-0026214-T03-IM6	P-0050110-T01-IM6	C-9VT4H3-L006-d	C-MTU93R-L008-d02	C-56E5E1-L005-d02	C-PF6D4D-L004-d03	C-ADX477-L004-d	C-LDL966-L003-d	C-9VT4H3-L005-d	C-LDL966-L002-d	C-LTL8WH-L005-d	C-ADX477-L003-d	P-0025754-T03-IM6	C-U2DE8W-L008-d05	C-P0WJ84-L001-d	C-CCDLHX-L003-d	C-LDL966-L001-d	C-C20WUD-L005-d02	C-YN77UU-L008-d	C-9VT4H3-L002-d	C-U2DE8W-L003-d	C-KDW0TJ-L003-d	P-0012459-T02-IM6	C-ADX477-L007-d	C-C20WUD-L003-d	C-LNNRMD-L006-d	C-1PFWH3-L003-d	P-0028553-T03-IM6	C-U2DE8W-L006-d03	C-5AMKK1-L002-d	P-0037280-T01-IM6	P-0019042-T03-IM6	C-FXFWPL-L003-d	C-CCDLHX-L010-d07	C-MTU93R-L004-d	C-MTU93R-L003-d	C-LNNRMD-L003-d	P-0028553-T01-IM6	C-P0WJ84-L005-d02	C-C20WUD-L004-d	C-U2DE8W-L004-d	C-FXFWPL-L007-d02	C-LNNRMD-L007-d

public/gist_msk_2025/case_lists/cases_cnaseq.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: gist_msk_2025
+stable_id: gist_msk_2025_cnaseq
+case_list_name: Samples with mutation and CNA data
+case_list_description: Samples with mutation and CNA data (183 samples)
+case_list_category: all_cases_with_mutation_and_cna_data
+case_list_ids:C-FXFWPL-L005-d	C-PF6D4D-L011-d10	C-9VT4H3-L008-d03	C-0VPHTC-L004-d	C-56E5E1-L001-d	P-0016265-T01-IM6	C-56E5E1-L002-d	P-0025754-T02-IM6	C-56E5E1-L004-d	P-0012403-T01-IM5	P-0045145-T02-IM7	C-PF6D4D-L003-d02	C-PF6D4D-L002-d	C-9VT4H3-L009-d04	C-LDL966-L004-d	C-0VPHTC-L003-d	C-J78RL6-L004-d	P-0043409-T01-IM6	P-0028553-T02-IM6	P-0019042-T04-IM6	C-C20WUD-L006-d03	P-0019042-T02-IM6	C-PF6D4D-L005-d04	C-H8TFUP-L006-d02	C-H8TFUP-L004-d	P-0025754-T04-IM6	P-0012459-T01-IM5	C-LTL8WH-L006-d02	C-J78RL6-L001-d	C-PF6D4D-L008-d07	C-U2DE8W-L001-d	C-DACC7T-L004-d	C-J78RL6-L003-d	C-U2DE8W-L002-d	P-0007702-T01-IM5	C-DACC7T-L003-d	C-DV6T1T-L001-d	C-P0WJ84-L002-d	C-H8TFUP-L003-d	C-DV6T1T-L002-d	C-LNNRMD-L005-d	C-J6WHA7-L002-d	C-C9VNYJ-L004-d	C-FXFWPL-L008-d03	C-P0WJ84-L004-d	P-0014184-T03-IM6	C-PF6D4D-L007-d06	C-ADX477-L005-d	C-PF6D4D-L006-d05	C-LTL8WH-L003-d	P-0044303-T01-IM6	C-CCDLHX-L001-d	C-CCDLHX-L002-d	C-C9VNYJ-L002-d	C-0VPHTC-L009-d04	C-CU7AUR-L008-d	C-P0WJ84-L003-d	P-0024909-T02-IM6	C-KDW0TJ-L001-d	C-DV6T1T-L003-d	P-0024909-T01-IM6	C-DV6T1T-L004-d	P-0045969-T01-IM6	C-C9VNYJ-L006-d	C-CCDLHX-L008-d05	C-0VPHTC-L008-d03	C-ADX477-L009-d03	P-0045969-T02-IM7	P-0044303-T02-IM7	C-ADX477-L008-d02	C-9VT4H3-L004-d	C-9VT4H3-L003-d	P-0026906-T03-IM6	C-MTU93R-L006-d	C-LTL8WH-L004-d	C-5AMKK1-L003-d	C-ADX477-L006-d	C-MTU93R-L005-d	C-1PFWH3-L001-d	C-KDW0TJ-L002-d	C-PF6D4D-L010-d09	C-1PFWH3-L002-d	C-1PFWH3-L004-d	P-0025934-T01-IM6	C-J6WHA7-L001-d	P-0026214-T02-IM6	C-PF6D4D-L001-d	P-0014184-T04-IM6	C-U2DE8W-L005-d02	P-0026906-T02-IM6	C-MTU93R-L002-d	C-P0WJ84-L006-d03	P-0007702-T02-IM6	C-C20WUD-L007-d04	C-FXFWPL-L002-d	C-CCDLHX-L006-d03	P-0040627-T01-IH3	C-J6WHA7-L004-d	C-U2DE8W-L007-d04	C-CCDLHX-L007-d04	P-0050110-T02-IM6	P-0026214-T01-IM6	C-ADX477-L010-d04	C-FXFWPL-L004-d	C-56E5E1-L003-d	P-0026679-T02-IM6	C-YN77UU-L007-d	C-H8TFUP-L001-d	C-DACC7T-L006-d	C-0VPHTC-L005-d	C-0VPHTC-L002-d	C-CCDLHX-L004-d	C-DACC7T-L005-d	C-LDL966-L005-d	C-LTL8WH-L007-d03	C-9VT4H3-L007-d02	C-CCDLHX-L009-d06	P-0043117-T01-IM6	P-0045145-T01-IM6	C-J6WHA7-L003-d	C-CCDLHX-L005-d02	C-ADX477-L011-d05	C-YN77UU-L013-d	C-J78RL6-L005-d	C-J78RL6-L002-d	C-FXFWPL-L009-d04	C-C9VNYJ-L005-d	P-0014184-T02-IM6	P-0026679-T01-IM6	C-H8TFUP-L005-d	C-H8TFUP-L002-d	C-0VPHTC-L007-d02	P-0029072-T02-IM6	P-0019948-T02-IM6	C-C20WUD-L002-d	C-CU7AUR-L004-d	C-LTL8WH-L002-d	C-C9VNYJ-L003-d	C-YN77UU-L015-d	C-PF6D4D-L009-d08	P-0026214-T03-IM6	P-0050110-T01-IM6	C-9VT4H3-L006-d	C-MTU93R-L008-d02	C-56E5E1-L005-d02	C-PF6D4D-L004-d03	C-ADX477-L004-d	C-LDL966-L003-d	C-9VT4H3-L005-d	C-LDL966-L002-d	C-LTL8WH-L005-d	C-ADX477-L003-d	P-0025754-T03-IM6	C-U2DE8W-L008-d05	C-P0WJ84-L001-d	C-CCDLHX-L003-d	C-LDL966-L001-d	C-C20WUD-L005-d02	C-YN77UU-L008-d	C-9VT4H3-L002-d	C-U2DE8W-L003-d	C-KDW0TJ-L003-d	P-0012459-T02-IM6	C-ADX477-L007-d	C-C20WUD-L003-d	C-LNNRMD-L006-d	C-1PFWH3-L003-d	P-0028553-T03-IM6	C-U2DE8W-L006-d03	C-5AMKK1-L002-d	P-0037280-T01-IM6	P-0019042-T03-IM6	C-FXFWPL-L003-d	C-CCDLHX-L010-d07	C-MTU93R-L004-d	C-MTU93R-L003-d	C-LNNRMD-L003-d	P-0028553-T01-IM6	C-P0WJ84-L005-d02	C-C20WUD-L004-d	C-U2DE8W-L004-d	C-FXFWPL-L007-d02	C-LNNRMD-L007-d

public/gist_msk_2025/case_lists/cases_sequenced.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: gist_msk_2025
+stable_id: gist_msk_2025_sequenced
+case_list_name: Samples with mutation data
+case_list_description: Samples with mutation data (183 samples)
+case_list_category: all_cases_with_mutation_data
+case_list_ids: C-FXFWPL-L005-d	C-PF6D4D-L011-d10	C-LDL966-L004-d	C-0VPHTC-L004-d	C-56E5E1-L001-d	P-0016265-T01-IM6	C-56E5E1-L002-d	P-0025754-T02-IM6	C-56E5E1-L004-d	P-0012403-T01-IM5	P-0045145-T02-IM7	C-PF6D4D-L003-d02	C-PF6D4D-L002-d	C-9VT4H3-L009-d04	C-9VT4H3-L008-d03	C-0VPHTC-L003-d	C-ADX477-L009-d03	C-J78RL6-L004-d	P-0043409-T01-IM6	P-0028553-T02-IM6	P-0019042-T04-IM6	C-C20WUD-L006-d03	P-0019042-T02-IM6	C-ADX477-L008-d02	C-H8TFUP-L006-d02	C-H8TFUP-L004-d	C-9VT4H3-L004-d	P-0012459-T01-IM5	C-LTL8WH-L006-d02	C-J78RL6-L001-d	C-PF6D4D-L008-d07	C-U2DE8W-L001-d	C-DACC7T-L004-d	C-J78RL6-L003-d	C-U2DE8W-L002-d	P-0007702-T01-IM5	C-DACC7T-L003-d	C-DV6T1T-L001-d	C-P0WJ84-L002-d	C-H8TFUP-L003-d	C-DV6T1T-L002-d	C-LNNRMD-L005-d	C-J6WHA7-L002-d	C-C9VNYJ-L004-d	C-P0WJ84-L004-d	P-0014184-T03-IM6	C-PF6D4D-L007-d06	C-ADX477-L005-d	C-PF6D4D-L006-d05	C-LTL8WH-L003-d	P-0044303-T01-IM6	C-CCDLHX-L002-d	C-C9VNYJ-L002-d	C-0VPHTC-L009-d04	C-CU7AUR-L008-d	C-P0WJ84-L003-d	P-0024909-T02-IM6	C-KDW0TJ-L001-d	C-DV6T1T-L003-d	P-0024909-T01-IM6	C-DV6T1T-L004-d	P-0045969-T01-IM6	C-C9VNYJ-L006-d	C-CCDLHX-L008-d05	C-0VPHTC-L008-d03	C-CCDLHX-L001-d	P-0045969-T02-IM7	P-0044303-T02-IM7	C-PF6D4D-L005-d04	P-0025754-T04-IM6	C-9VT4H3-L003-d	P-0026906-T03-IM6	C-MTU93R-L006-d	C-LTL8WH-L004-d	C-5AMKK1-L003-d	C-ADX477-L006-d	C-MTU93R-L005-d	C-1PFWH3-L001-d	C-KDW0TJ-L002-d	C-PF6D4D-L010-d09	C-1PFWH3-L002-d	C-1PFWH3-L004-d	P-0025934-T01-IM6	C-C20WUD-L003-d	C-DACC7T-L006-d	C-PF6D4D-L001-d	P-0014184-T04-IM6	C-U2DE8W-L005-d02	P-0026906-T02-IM6	C-MTU93R-L002-d	C-P0WJ84-L006-d03	P-0007702-T02-IM6	C-C20WUD-L007-d04	C-FXFWPL-L002-d	C-CCDLHX-L006-d03	P-0040627-T01-IH3	C-J6WHA7-L004-d	C-1PFWH3-L003-d	C-CCDLHX-L007-d04	P-0050110-T02-IM6	P-0028553-T03-IM6	C-ADX477-L010-d04	C-FXFWPL-L004-d	C-56E5E1-L003-d	P-0026679-T02-IM6	C-YN77UU-L007-d	C-H8TFUP-L001-d	P-0026214-T02-IM6	C-0VPHTC-L005-d	C-0VPHTC-L002-d	C-CCDLHX-L004-d	C-DACC7T-L005-d	C-LDL966-L005-d	C-LTL8WH-L007-d03	C-9VT4H3-L007-d02	C-CCDLHX-L009-d06	P-0043117-T01-IM6	P-0045145-T01-IM6	C-J6WHA7-L003-d	C-CCDLHX-L005-d02	C-ADX477-L011-d05	C-YN77UU-L013-d	C-J78RL6-L005-d	C-J78RL6-L002-d	C-FXFWPL-L009-d04	C-C9VNYJ-L005-d	P-0014184-T02-IM6	P-0026679-T01-IM6	C-H8TFUP-L005-d	C-H8TFUP-L002-d	C-0VPHTC-L007-d02	P-0029072-T02-IM6	P-0019948-T02-IM6	C-C20WUD-L002-d	C-CU7AUR-L004-d	C-CCDLHX-L010-d07	C-LTL8WH-L002-d	C-C9VNYJ-L003-d	C-YN77UU-L015-d	C-PF6D4D-L009-d08	P-0028553-T01-IM6	P-0050110-T01-IM6	C-9VT4H3-L006-d	C-MTU93R-L008-d02	C-56E5E1-L005-d02	C-PF6D4D-L004-d03	C-ADX477-L004-d	C-LDL966-L003-d	C-9VT4H3-L005-d	C-LDL966-L002-d	C-LTL8WH-L005-d	C-ADX477-L003-d	P-0025754-T03-IM6	C-U2DE8W-L008-d05	C-P0WJ84-L001-d	C-CCDLHX-L003-d	C-LDL966-L001-d	C-C20WUD-L005-d02	C-YN77UU-L008-d	C-9VT4H3-L002-d	C-U2DE8W-L003-d	C-KDW0TJ-L003-d	P-0012459-T02-IM6	C-ADX477-L007-d	C-J6WHA7-L001-d	C-LNNRMD-L006-d	C-U2DE8W-L007-d04	P-0026214-T01-IM6	C-U2DE8W-L006-d03	C-5AMKK1-L002-d	P-0037280-T01-IM6	P-0019042-T03-IM6	C-FXFWPL-L003-d	C-FXFWPL-L008-d03	C-MTU93R-L004-d	C-MTU93R-L003-d	C-LNNRMD-L003-d	P-0026214-T03-IM6	C-LNNRMD-L007-d	C-C20WUD-L004-d	C-U2DE8W-L004-d	C-FXFWPL-L007-d02	C-P0WJ84-L005-d02

public/gist_msk_2025/case_lists/cases_sv.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: gist_msk_2025
+stable_id: gist_msk_2025_sv
+case_list_name: Samples with SV data
+case_list_description: All samples with SV data (183 samples)
+case_list_category: all_cases_with_sv_data
+case_list_ids:C-FXFWPL-L005-d	C-PF6D4D-L011-d10	C-9VT4H3-L008-d03	C-0VPHTC-L004-d	C-56E5E1-L001-d	P-0016265-T01-IM6	C-56E5E1-L002-d	P-0025754-T02-IM6	C-56E5E1-L004-d	P-0012403-T01-IM5	P-0045145-T02-IM7	C-PF6D4D-L003-d02	C-PF6D4D-L002-d	C-9VT4H3-L009-d04	C-LDL966-L004-d	C-0VPHTC-L003-d	C-J78RL6-L004-d	P-0043409-T01-IM6	P-0028553-T02-IM6	P-0019042-T04-IM6	C-C20WUD-L006-d03	P-0019042-T02-IM6	C-PF6D4D-L005-d04	C-H8TFUP-L006-d02	C-H8TFUP-L004-d	P-0025754-T04-IM6	P-0012459-T01-IM5	C-LTL8WH-L006-d02	C-J78RL6-L001-d	C-PF6D4D-L008-d07	C-U2DE8W-L001-d	C-DACC7T-L004-d	C-J78RL6-L003-d	C-U2DE8W-L002-d	P-0007702-T01-IM5	C-DACC7T-L003-d	C-DV6T1T-L001-d	C-P0WJ84-L002-d	C-H8TFUP-L003-d	C-DV6T1T-L002-d	C-LNNRMD-L005-d	C-J6WHA7-L002-d	C-C9VNYJ-L004-d	C-FXFWPL-L008-d03	C-P0WJ84-L004-d	P-0014184-T03-IM6	C-PF6D4D-L007-d06	C-ADX477-L005-d	C-PF6D4D-L006-d05	C-LTL8WH-L003-d	P-0044303-T01-IM6	C-CCDLHX-L001-d	C-CCDLHX-L002-d	C-C9VNYJ-L002-d	C-0VPHTC-L009-d04	C-CU7AUR-L008-d	C-P0WJ84-L003-d	P-0024909-T02-IM6	C-KDW0TJ-L001-d	C-DV6T1T-L003-d	P-0024909-T01-IM6	C-DV6T1T-L004-d	P-0045969-T01-IM6	C-C9VNYJ-L006-d	C-CCDLHX-L008-d05	C-0VPHTC-L008-d03	C-ADX477-L009-d03	P-0045969-T02-IM7	P-0044303-T02-IM7	C-ADX477-L008-d02	C-9VT4H3-L004-d	C-9VT4H3-L003-d	P-0026906-T03-IM6	C-MTU93R-L006-d	C-LTL8WH-L004-d	C-5AMKK1-L003-d	C-ADX477-L006-d	C-MTU93R-L005-d	C-1PFWH3-L001-d	C-KDW0TJ-L002-d	C-PF6D4D-L010-d09	C-1PFWH3-L002-d	C-1PFWH3-L004-d	P-0025934-T01-IM6	C-J6WHA7-L001-d	P-0026214-T02-IM6	C-PF6D4D-L001-d	P-0014184-T04-IM6	C-U2DE8W-L005-d02	P-0026906-T02-IM6	C-MTU93R-L002-d	C-P0WJ84-L006-d03	P-0007702-T02-IM6	C-C20WUD-L007-d04	C-FXFWPL-L002-d	C-CCDLHX-L006-d03	P-0040627-T01-IH3	C-J6WHA7-L004-d	C-U2DE8W-L007-d04	C-CCDLHX-L007-d04	P-0050110-T02-IM6	P-0026214-T01-IM6	C-ADX477-L010-d04	C-FXFWPL-L004-d	C-56E5E1-L003-d	P-0026679-T02-IM6	C-YN77UU-L007-d	C-H8TFUP-L001-d	C-DACC7T-L006-d	C-0VPHTC-L005-d	C-0VPHTC-L002-d	C-CCDLHX-L004-d	C-DACC7T-L005-d	C-LDL966-L005-d	C-LTL8WH-L007-d03	C-9VT4H3-L007-d02	C-CCDLHX-L009-d06	P-0043117-T01-IM6	P-0045145-T01-IM6	C-J6WHA7-L003-d	C-CCDLHX-L005-d02	C-ADX477-L011-d05	C-YN77UU-L013-d	C-J78RL6-L005-d	C-J78RL6-L002-d	C-FXFWPL-L009-d04	C-C9VNYJ-L005-d	P-0014184-T02-IM6	P-0026679-T01-IM6	C-H8TFUP-L005-d	C-H8TFUP-L002-d	C-0VPHTC-L007-d02	P-0029072-T02-IM6	P-0019948-T02-IM6	C-C20WUD-L002-d	C-CU7AUR-L004-d	C-LTL8WH-L002-d	C-C9VNYJ-L003-d	C-YN77UU-L015-d	C-PF6D4D-L009-d08	P-0026214-T03-IM6	P-0050110-T01-IM6	C-9VT4H3-L006-d	C-MTU93R-L008-d02	C-56E5E1-L005-d02	C-PF6D4D-L004-d03	C-ADX477-L004-d	C-LDL966-L003-d	C-9VT4H3-L005-d	C-LDL966-L002-d	C-LTL8WH-L005-d	C-ADX477-L003-d	P-0025754-T03-IM6	C-U2DE8W-L008-d05	C-P0WJ84-L001-d	C-CCDLHX-L003-d	C-LDL966-L001-d	C-C20WUD-L005-d02	C-YN77UU-L008-d	C-9VT4H3-L002-d	C-U2DE8W-L003-d	C-KDW0TJ-L003-d	P-0012459-T02-IM6	C-ADX477-L007-d	C-C20WUD-L003-d	C-LNNRMD-L006-d	C-1PFWH3-L003-d	P-0028553-T03-IM6	C-U2DE8W-L006-d03	C-5AMKK1-L002-d	P-0037280-T01-IM6	P-0019042-T03-IM6	C-FXFWPL-L003-d	C-CCDLHX-L010-d07	C-MTU93R-L004-d	C-MTU93R-L003-d	C-LNNRMD-L003-d	P-0028553-T01-IM6	C-P0WJ84-L005-d02	C-C20WUD-L004-d	C-U2DE8W-L004-d	C-FXFWPL-L007-d02	C-LNNRMD-L007-d

public/gist_msk_2025/meta_clinical_patient.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: gist_msk_2025
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt

public/gist_msk_2025/meta_clinical_sample.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: gist_msk_2025
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt

public/gist_msk_2025/meta_cna.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: gist_msk_2025
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+show_profile_in_analysis_tab: true
+profile_name: Copy Number Alterations (MSK-IMPACT, HEME)
+profile_description: Copy number alterations from targeted sequencing via MK-IMPACT, HEME on Illumina HiSeq sequencers.
+datatype: DISCRETE
+data_filename: data_cna.txt
+stable_id: gistic

public/gist_msk_2025/meta_cna_hg19_seg.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: gist_msk_2025
+data_filename: data_cna_hg19.seg
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+show_profile_in_analysis_tab: FALSE
+profile_name: Segment data values
+description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals) from TCGA.
+reference_genome_id: hg19

public/gist_msk_2025/meta_gene_panel_matrix.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: gist_msk_2025
+data_filename: data_gene_panel_matrix.txt
+genetic_alteration_type: GENE_PANEL_MATRIX
+datatype: GENE_PANEL_MATRIX

public/gist_msk_2025/meta_mutations.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: gist_msk_2025
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+profile_name: Mutations
+profile_description: Mutation data from MSK-IMPACT, HEME.
+show_profile_in_analysis_tab: true
+data_filename: data_mutations.txt
+stable_id: mutations

public/gist_msk_2025/meta_study.txt

@@ -0,0 +1,6 @@
+type_of_cancer: gist
+cancer_study_identifier: gist_msk_2025
+name: Gastrointestinal Stromal Tumor (MSK, Clin Cancer Res 2025)
+description: Targeted sequencing of 42 gastrointestinal stromal tumor samples and their matched normals via MSK-IMPACT.
+pmid: 40694085
+citation: Kelly, Ciara M et al. Clinical cancer research 2025

public/gist_msk_2025/meta_sv.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: gist_msk_2025
+genetic_alteration_type: STRUCTURAL_VARIANT
+datatype: SV
+profile_name: Structural Variants
+profile_description: Structural Variants
+show_profile_in_analysis_tab: true
+data_filename: data_sv.txt
+stable_id: structural_variants