diff --git a/public/stad_tcga_pan_can_atlas_2018/data_mutations.txt b/public/stad_tcga_pan_can_atlas_2018/data_mutations.txt index cebd9248b7..451611cce7 100644 --- a/public/stad_tcga_pan_can_atlas_2018/data_mutations.txt +++ b/public/stad_tcga_pan_can_atlas_2018/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:1e8fba7d75a80314a15dbc59fba5c9019b42d1f02102adaa9623e343da78816b -size 264905582 +oid sha256:84da71c9c20598ebc5e62a8ee078466d780abe31d5d2415918058a14c77bf808 +size 237607789 diff --git a/public/stad_tcga_pub/data_mutations.txt b/public/stad_tcga_pub/data_mutations.txt index 45d30373be..87ded8f044 100644 --- a/public/stad_tcga_pub/data_mutations.txt +++ b/public/stad_tcga_pub/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:6f3bbdb387b04b45f76eb7ab31844e7758bf527d3c0cf081f6f9f438220364d0 -size 139102357 +oid sha256:cc946f63738d6d96856af47f4845f965c7f3d1e654b65f5333abcf9fc695c104 +size 138167306 diff --git a/public/stes_tcga_pub/data_mutations.txt b/public/stes_tcga_pub/data_mutations.txt index f0d6c2cc07..2e0d1e25c5 100644 --- a/public/stes_tcga_pub/data_mutations.txt +++ b/public/stes_tcga_pub/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:7b86b49a062b35107f00b17b12536b8530bc68fa83d1fe86739b79bcf0e28dd2 -size 79281625 +oid sha256:97bb2e84bb22649767a66aa8b1ab243b2ea082eb7c14bef4c74557f25f2fa834 +size 76025736 diff --git a/public/thca_tcga/data_mutations.txt b/public/thca_tcga/data_mutations.txt index 5f2d232592..957363b3b7 100644 --- a/public/thca_tcga/data_mutations.txt +++ b/public/thca_tcga/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:5c5e60a1888e40d48d9771aecb003c73a108218ce4d76035676c7462175e912e -size 8491820 +oid sha256:20e0b07d3a2e373c765908b70938beb16b013287ef7e319524376f2249a2280c +size 8065389 diff --git a/public/thca_tcga_pan_can_atlas_2018/data_mutations.txt 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a/public/tmb_mskcc_2018/data_mutations.txt b/public/tmb_mskcc_2018/data_mutations.txt index ac0b9bda34..bd60a5fe63 100644 --- a/public/tmb_mskcc_2018/data_mutations.txt +++ b/public/tmb_mskcc_2018/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:176c06bdc79b7af49daabea18eb7aa750d4d7c6ac79b9524ae182d6a8792582d -size 6947060 +oid sha256:94c2b9ac21a9f50f843c3327b1592e608f0ad55e0e463e19c85f7dd79b65a60b +size 6871948 diff --git a/public/ucec_ancestry_cds_msk_2023/data_mutations.txt b/public/ucec_ancestry_cds_msk_2023/data_mutations.txt index 9fa9bb21d9..bd43735414 100644 --- a/public/ucec_ancestry_cds_msk_2023/data_mutations.txt +++ b/public/ucec_ancestry_cds_msk_2023/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:75ae492a0b89b84ad62608ea2831ecd1f74bf67b0660fa0af0e78bd28bac875c -size 10699224 +oid sha256:cd5b8710aa5c23df81c78cda237ccbea4dde80ea164c680ad29dd1dda87519e2 +size 10670172 diff --git a/public/ucec_msk_2018/data_mutations.txt b/public/ucec_msk_2018/data_mutations.txt index c498c5cd98..8f2839415b 100644 --- a/public/ucec_msk_2018/data_mutations.txt +++ b/public/ucec_msk_2018/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:c709ac612cca20822417669a0e622af82f52e4aab50e4f1782e7b0bfe5d32c00 -size 871971 +oid sha256:90c47fa543370fae8d6ce79ec607088c4342a590e33cc6e6244909677df64b5b +size 869227 diff --git a/public/ucec_msk_2024/data_mutations.txt b/public/ucec_msk_2024/data_mutations.txt index c2b5b45125..4fec5654e4 100644 --- a/public/ucec_msk_2024/data_mutations.txt +++ b/public/ucec_msk_2024/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:731f6b5884af1409d14ff3d08443e27a6f866bd944e37cccf67d44596be9d17e -size 532735 +oid sha256:95eac857966337d369c52290e6c41ae8252c3dfa205ac51d47cf35e9d381c276 +size 532392 diff --git a/public/ucec_tcga_pan_can_atlas_2018/data_mutations.txt 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index f75527518b..9f768d2b70 100644 --- a/public/ucs_msk_2024/meta_cna.txt +++ b/public/ucs_msk_2024/meta_cna.txt @@ -5,4 +5,4 @@ show_profile_in_analysis_tab: true profile_name: Copy Number Alterations (MSK-IMPACT, HEME) profile_description: Copy number alterations from targeted sequencing via MK-IMPACT. datatype: DISCRETE -data_filename: data_CNA.txt +data_filename: data_cna.txt diff --git a/public/usarc_msk_2020/data_mutations.txt b/public/usarc_msk_2020/data_mutations.txt index c37a3ebb48..4ffbfd308d 100644 --- a/public/usarc_msk_2020/data_mutations.txt +++ b/public/usarc_msk_2020/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:048cad626b0a66404909ac5427def326325cbf4ab8a0747a7286ba90ed0d5274 -size 119615 +oid sha256:655c75d2d53e3ad459a989bdfae8b56bdf2b5335cd889a7989d66bcfe6b6e1cb +size 118881 diff --git a/public/utuc_msk_2019/data_mutations.txt b/public/utuc_msk_2019/data_mutations.txt index 3707f50c24..b3b3d0440d 100644 --- 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