[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](pre-commit/pre-commit-hooks@v5.0.0...v6.0.0)
- [github.com/astral-sh/ruff-pre-commit: v0.9.6 → v0.15.9](astral-sh/ruff-pre-commit@v0.9.6...v0.15.9)
- [github.com/snakemake/snakefmt: v0.10.2 → v1.0.0](snakemake/snakefmt@v0.10.2...v1.0.0)
- [github.com/codespell-project/codespell: v2.4.1 → v2.4.2](codespell-project/codespell@v2.4.1...v2.4.2)

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -4,7 +4,7 @@ default_language_version:
 repos:
   # Generic 'file quality' testing
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       # Machine-friendliness
       - id: trailing-whitespace
@@ -24,21 +24,21 @@ repos:
 
   # Python file formatting
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.6
+    rev: v0.15.9
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
       - id: ruff-format
 
   # Snakemake file formatting
   - repo: https://github.com/snakemake/snakefmt
-    rev: v0.10.2
+    rev: v1.0.0
     hooks:
       - id: snakefmt
 
   # Spelling
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.4.1
+    rev: v2.4.2
     hooks:
       - id: codespell
         files: .*\.(py|smk|md)$|^Snakefile$