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diffBraggKOKKOS.cpp
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640 lines (579 loc) · 30 KB
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#include <sys/time.h>
#include <cstdio>
#include "diffBraggKOKKOS.h"
#include "diffBragg_kokkos_kernel.h"
#define PRINTOUT(flag, function, ...) \
if (flag) { \
function<true>(__VA_ARGS__); \
} else { \
function<false>(__VA_ARGS__); \
} \
uint32_t combine_refinement_flags(flags& db_flags) {
uint32_t refine_flag = 0;
refine_flag |= db_flags.refine_diffuse * REFINE_DIFFUSE;
refine_flag |= db_flags.refine_fcell * REFINE_FCELL;
refine_flag |= db_flags.refine_eta * REFINE_ETA;
refine_flag |= db_flags.refine_Umat[0] * REFINE_UMAT1;
refine_flag |= db_flags.refine_Umat[1] * REFINE_UMAT2;
refine_flag |= db_flags.refine_Umat[2] * REFINE_UMAT3;
refine_flag |= db_flags.refine_Ncells_def * REFINE_NCELLS_DEF;
refine_flag |= db_flags.refine_Ncells[0] * REFINE_NCELLS1;
refine_flag |= db_flags.refine_Ncells[1] * REFINE_NCELLS2;
refine_flag |= db_flags.refine_Ncells[2] * REFINE_NCELLS3;
refine_flag |= db_flags.refine_panel_rot[0] * REFINE_PANEL_ROT1;
refine_flag |= db_flags.refine_panel_rot[1] * REFINE_PANEL_ROT2;
refine_flag |= db_flags.refine_panel_rot[2] * REFINE_PANEL_ROT3;
refine_flag |= db_flags.refine_panel_origin[0] * REFINE_PANEL_ORIGIN1;
refine_flag |= db_flags.refine_panel_origin[1] * REFINE_PANEL_ORIGIN2;
refine_flag |= db_flags.refine_panel_origin[2] * REFINE_PANEL_ORIGIN3;
refine_flag |= db_flags.refine_lambda[0] * REFINE_LAMBDA1;
refine_flag |= db_flags.refine_lambda[1] * REFINE_LAMBDA2;
refine_flag |= db_flags.refine_Bmat[0] * REFINE_BMAT1;
refine_flag |= db_flags.refine_Bmat[1] * REFINE_BMAT2;
refine_flag |= db_flags.refine_Bmat[2] * REFINE_BMAT3;
refine_flag |= db_flags.refine_Bmat[3] * REFINE_BMAT4;
refine_flag |= db_flags.refine_Bmat[4] * REFINE_BMAT5;
refine_flag |= db_flags.refine_Bmat[5] * REFINE_BMAT6;
refine_flag |= db_flags.refine_fp_fdp * REFINE_FP_FDP;
refine_flag |= db_flags.refine_Icell * REFINE_ICELL;
return refine_flag;
}
void diffBraggKOKKOS::diffBragg_sum_over_steps_kokkos(
int Npix_to_model,
std::vector<unsigned int>& panels_fasts_slows,
image_type& floatimage,
images& d_image,
images& d2_image,
step_arrays& db_steps,
detector& db_det,
beam& db_beam,
crystal& db_cryst,
flags& db_flags,
cuda_flags& db_cu_flags,
// diffBragg_kokkosPointers& kp,
timer_variables& TIMERS) {
Kokkos::Tools::pushRegion("diffBragg_sum_over_steps_kokkos");
Kokkos::Tools::pushRegion("local detector, beam and crystal");
kokkos_detector local_det(db_det);
kokkos_beam local_beam(db_beam);
// kokkos_crystal local_cryst(db_cryst);
Kokkos::Tools::popRegion();
double time;
struct timeval t1, t; // t1 times larger blocks of code, and t is used to time shorter blocks of code
gettimeofday(&t1, 0);
// determine if we need to allocate pixels, and how many.
// For best usage, one should use the diffBragg property (visible from Python) Npix_to_allocate
// in order to just allocate to the GPU - this is useful for ensemble refinement, where each
// shot can have a variable number of pixels being modeled, and ony only needs to allocate the
// device once (with the largest expected number of pixels for a given shot)
// TODO clean up this logic a bit
if (m_device_is_allocated && (Npix_to_model > m_npix_allocated)) {
printf(
"Need to re-allocate pixels, currently have %d allocated, but trying to model %d\n",
m_npix_allocated, Npix_to_model);
exit(-1);
} else if (db_cu_flags.Npix_to_allocate == -1) {
db_cu_flags.Npix_to_allocate = Npix_to_model;
} else if (Npix_to_model > db_cu_flags.Npix_to_allocate) {
printf(
"Npix to model=%d is greater than the number of pixel requested for allocation (%d)!\n",
Npix_to_model, db_cu_flags.Npix_to_allocate);
exit(-1);
}
// support dynamic allocation for different numbers of sources
Kokkos::Tools::pushRegion("resize sources");
if (m_previous_nsource != 0 && m_previous_nsource != local_beam.number_of_sources) {
// printf("Resizing for %d sources!:\n", local_beam.number_of_sources);
resize(m_Fhkl_channels, local_beam.number_of_sources);
resize(m_source_X, local_beam.number_of_sources);
resize(m_source_Y, local_beam.number_of_sources);
resize(m_source_Z, local_beam.number_of_sources);
resize(m_source_I, local_beam.number_of_sources);
resize(m_source_lambda, local_beam.number_of_sources);
m_previous_nsource = local_beam.number_of_sources;
}
Kokkos::Tools::popRegion();
if (m_device_is_allocated) {
if (db_flags.verbose) {
printf(
"Will model %d pixels (GPU has %d pre-allocated pix)\n", Npix_to_model,
m_npix_allocated);
}
} else {
Kokkos::Tools::pushRegion("Device_allocate");
if (db_flags.verbose) {
printf(
"Will model %d pixels and allocate %d pix\n", Npix_to_model,
db_cu_flags.Npix_to_allocate);
}
// Check the Fhkl geradient arrays
if (db_flags.Fhkl_have_scale_factors){
resize(m_data_residual, db_cu_flags.Npix_to_allocate);
resize(m_data_variance, db_cu_flags.Npix_to_allocate);
resize(m_data_freq, db_cu_flags.Npix_to_allocate);
resize(m_data_trusted, db_cu_flags.Npix_to_allocate);
resize(m_FhklLinear_ASUid, db_cryst.FhklLinear_ASUid.size());
resize(m_Fhkl_scale, d_image.Fhkl_scale.size());
// alloc Fhkl_scale_deriv to bs same length as Fhkl_scale.size(), as Fhkl_scale_deriv is only set when Fhkl_gradient_mode=True, typpically not first iteration
resize(m_Fhkl_scale_deriv, d_image.Fhkl_scale.size());
m_Fhkl_grad_arrays_allocated = true;
}
resize(m_Fhkl_channels, local_beam.number_of_sources);
resize(m_source_X, local_beam.number_of_sources);
resize(m_source_Y, local_beam.number_of_sources);
resize(m_source_Z, local_beam.number_of_sources);
resize(m_source_I, local_beam.number_of_sources);
resize(m_source_lambda, local_beam.number_of_sources);
m_previous_nsource = local_beam.number_of_sources;
resize(m_UMATS, db_cryst.UMATS.size());
resize(m_UMATS_RXYZ, db_cryst.UMATS_RXYZ.size());
resize(m_AMATS, db_cryst.UMATS_RXYZ.size());
if (db_cryst.UMATS_RXYZ_prime.size() > 0) {
resize(m_UMATS_RXYZ_prime, db_cryst.UMATS_RXYZ_prime.size());
}
if (db_cryst.UMATS_RXYZ_dbl_prime.size() > 0) {
resize(m_UMATS_RXYZ_dbl_prime, db_cryst.UMATS_RXYZ_dbl_prime.size());
}
resize(m_dB_Mats, db_cryst.dB_Mats.size());
resize(m_dB2_Mats, db_cryst.dB2_Mats.size());
resize(m_RotMats, db_cryst.RotMats.size());
resize(m_dRotMats, db_cryst.dRotMats.size());
resize(m_d2RotMats, db_cryst.d2RotMats.size());
resize(m_fdet_vectors, local_det.fdet_vectors.size());
resize(m_sdet_vectors, local_det.sdet_vectors.size());
resize(m_odet_vectors, local_det.odet_vectors.size());
resize(m_pix0_vectors, local_det.pix0_vectors.size());
resize(m_close_distances, local_det.close_distances.size());
if (db_cryst.fpfdp.size() > 0) {
resize(m_fpfdp, db_cryst.fpfdp.size());
resize(m_atom_data, db_cryst.atom_data.size());
}
if (db_cryst.fpfdp_derivs.size() > 0) {
resize(m_fpfdp_derivs, db_cryst.fpfdp_derivs.size());
}
resize(m_Fhkl, db_cryst.FhklLinear.size());
if (db_flags.complex_miller) {
resize(m_Fhkl2, db_cryst.FhklLinear.size());
}
resize(m_dF_vecs, local_det.dF_vecs.size());
resize(m_dS_vecs, local_det.dF_vecs.size());
resize(m_floatimage, db_cu_flags.Npix_to_allocate);
if (db_flags.wavelength_img) {
resize(m_wavelenimage, 4*db_cu_flags.Npix_to_allocate);
}
if (db_flags.refine_diffuse) {
resize(m_d_diffuse_gamma_images, db_cu_flags.Npix_to_allocate * 3);
resize(m_d_diffuse_sigma_images, db_cu_flags.Npix_to_allocate * 3);
}
if (db_flags.refine_fcell) {
resize(m_d_fcell_images, db_cu_flags.Npix_to_allocate);
resize(m_d2_fcell_images, db_cu_flags.Npix_to_allocate);
}
if (db_flags.refine_eta) {
resize(m_d_eta_images, db_cu_flags.Npix_to_allocate * 3);
resize(m_d2_eta_images, db_cu_flags.Npix_to_allocate * 3);
}
if (std::count(db_flags.refine_Umat.begin(), db_flags.refine_Umat.end(), true) > 0) {
resize(m_d_Umat_images, db_cu_flags.Npix_to_allocate * 3);
resize(m_d2_Umat_images, db_cu_flags.Npix_to_allocate * 3);
}
if (std::count(db_flags.refine_Ncells.begin(), db_flags.refine_Ncells.end(), true) > 0 ||
db_flags.refine_Ncells_def) {
resize(m_d_Ncells_images, db_cu_flags.Npix_to_allocate * 6);
resize(m_d2_Ncells_images, db_cu_flags.Npix_to_allocate * 6);
}
if (std::count(db_flags.refine_panel_rot.begin(), db_flags.refine_panel_rot.end(), true) >
0) {
resize(m_d_panel_rot_images, db_cu_flags.Npix_to_allocate * 3);
}
if (std::count(
db_flags.refine_panel_origin.begin(), db_flags.refine_panel_origin.end(), true) >
0) {
resize(m_d_panel_orig_images, db_cu_flags.Npix_to_allocate * 3);
}
if (std::count(db_flags.refine_lambda.begin(), db_flags.refine_lambda.end(), true) > 0) {
resize(m_d_lambda_images, db_cu_flags.Npix_to_allocate * 2);
}
if (std::count(db_flags.refine_Bmat.begin(), db_flags.refine_Bmat.end(), true) > 0) {
resize(m_d_Bmat_images, db_cu_flags.Npix_to_allocate * 6);
resize(m_d2_Bmat_images, db_cu_flags.Npix_to_allocate * 6);
}
if (db_flags.refine_fp_fdp) {
resize(m_d_fp_fdp_images, db_cu_flags.Npix_to_allocate * 2);
}
if (db_cryst.nominal_hkl.size() > 0) {
resize(m_nominal_hkl, db_cu_flags.Npix_to_allocate * 3);
}
resize(m_panels_fasts_slows, db_cu_flags.Npix_to_allocate * 3);
m_refine_flag = combine_refinement_flags(db_flags);
if (m_refine_flag) {
resize(m_manager_dI, db_cu_flags.Npix_to_allocate);
resize(m_manager_dI2, db_cu_flags.Npix_to_allocate);
}
m_npix_allocated = db_cu_flags.Npix_to_allocate;
Kokkos::Tools::popRegion();
} // END of allocation
bool ALLOC = !m_device_is_allocated; // shortcut variable
easy_time(TIMERS.cuda_alloc, t1, TIMERS.recording); //, db_flags.verbose > 1);
// ALLOC = false;
// BEGIN COPYING DATA
gettimeofday(&t1, 0);
bool FORCE_COPY = true;
// END step position
if (db_flags.Fhkl_gradient_mode){
kokkostbx::transfer_vector2kokkos(m_data_residual, d_image.residual);
kokkostbx::transfer_vector2kokkos(m_data_variance, d_image.variance);
kokkostbx::transfer_vector2kokkos(m_data_trusted, d_image.trusted);
kokkostbx::transfer_vector2kokkos(m_data_freq, d_image.freq);
}
if (db_flags.Fhkl_have_scale_factors && ALLOC){
kokkostbx::transfer_vector2kokkos(m_FhklLinear_ASUid, db_cryst.FhklLinear_ASUid);
}
Kokkos::Tools::pushRegion("BEGIN Fhkl have scale factors");
gettimeofday(&t, 0);
if (db_flags.Fhkl_have_scale_factors){
if (db_cu_flags.update_Fhkl_scales || ALLOC){
kokkostbx::transfer_vector2kokkos(m_Fhkl_scale, d_image.Fhkl_scale);
db_cu_flags.update_Fhkl_scales = false;
}
if (db_cu_flags.update_Fhkl_channels || ALLOC){
kokkostbx::transfer_vector2kokkos(m_Fhkl_channels, db_beam.Fhkl_channels);
db_cu_flags.update_Fhkl_channels = false;
}
::Kokkos::deep_copy(m_Fhkl_scale_deriv, 0);
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_Fhkl_scale, t, TIMERS.recording); //, db_flags.verbose > 1);
// BEGIN sources
Kokkos::Tools::pushRegion("BEGIN sources");
gettimeofday(&t, 0);
if (db_cu_flags.update_sources || ALLOC) {
int source_count = local_beam.number_of_sources;
kokkostbx::transfer_double2kokkos(m_source_X, local_beam.source_X, source_count);
kokkostbx::transfer_double2kokkos(m_source_Y, local_beam.source_Y, source_count);
kokkostbx::transfer_double2kokkos(m_source_Z, local_beam.source_Z, source_count);
kokkostbx::transfer_double2kokkos(m_source_I, local_beam.source_I, source_count);
kokkostbx::transfer_double2kokkos(m_source_lambda, local_beam.source_lambda, source_count);
auto tmp_src_X = m_source_X;
auto tmp_src_Y = m_source_Y;
auto tmp_src_Z = m_source_Z;
Kokkos::parallel_for(
"normalize incident vector", source_count, KOKKOS_LAMBDA(const int& i) {
KOKKOS_VEC3 incident{tmp_src_X(i), tmp_src_Y(i), tmp_src_Z(i)};
incident.normalize();
tmp_src_X(i) = incident.x_val();
tmp_src_Y(i) = incident.y_val();
tmp_src_Z(i) = incident.z_val();
});
Kokkos::fence();
if (db_flags.verbose > 1)
printf("H2D sources\n");
db_cu_flags.update_sources = false;
}
easy_time(TIMERS.copy_sources, t, TIMERS.recording); //, db_flags.verbose > 1);
Kokkos::Tools::popRegion();
// END sources
// UMATS
gettimeofday(&t, 0);
Kokkos::Tools::pushRegion("UMATS");
if (db_cu_flags.update_umats || ALLOC || FORCE_COPY) {
transfer_KOKKOS_MAT3(m_UMATS, db_cryst.UMATS);
transfer_KOKKOS_MAT3(m_UMATS_RXYZ, db_cryst.UMATS_RXYZ);
transfer_KOKKOS_MAT3(m_UMATS_RXYZ_prime, db_cryst.UMATS_RXYZ_prime);
transfer_KOKKOS_MAT3(m_UMATS_RXYZ_dbl_prime, db_cryst.UMATS_RXYZ_dbl_prime);
if (db_flags.verbose > 1)
printf("H2D Done copying Umats\n");
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_umats, t, TIMERS.recording); //, db_flags.verbose > 1);
// END UMATS
gettimeofday(&t, 0);
if (db_cu_flags.update_umats || ALLOC || FORCE_COPY) {
auto Amat_init = db_cryst.eig_U*db_cryst.eig_B*1e10*(db_cryst.eig_O.transpose());
auto host_AMATS = Kokkos::create_mirror_view(m_AMATS);
for (int i=0; i<db_cryst.UMATS_RXYZ.size(); ++i) {
host_AMATS(i) = to_mat3((db_cryst.UMATS_RXYZ[i]*Amat_init).transpose());
}
Kokkos::deep_copy(m_AMATS, host_AMATS);
if (db_flags.verbose > 1)
printf("H2D Done copying Amats\n");
}
easy_time(TIMERS.copy_amats, t, TIMERS.recording);
// BMATS
gettimeofday(&t, 0);
Kokkos::Tools::pushRegion("BMATS");
if (db_cu_flags.update_dB_mats || ALLOC || FORCE_COPY) {
transfer_KOKKOS_MAT3(m_dB_Mats, db_cryst.dB_Mats);
transfer_KOKKOS_MAT3(m_dB2_Mats, db_cryst.dB2_Mats);
if (db_flags.verbose > 1)
printf("H2D Done copying dB_Mats\n");
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_bmats, t, TIMERS.recording);
// END BMATS
// ROT MATS
gettimeofday(&t, 0);
Kokkos::Tools::pushRegion("ROT MATS");
if (db_cu_flags.update_rotmats || ALLOC || FORCE_COPY) {
transfer_KOKKOS_MAT3(m_RotMats, db_cryst.RotMats);
transfer_KOKKOS_MAT3(m_dRotMats, db_cryst.dRotMats);
transfer_KOKKOS_MAT3(m_d2RotMats, db_cryst.d2RotMats);
if (db_flags.verbose > 1)
printf("H2D Done copying rotmats\n");
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_rotmats, t, TIMERS.recording);
// END ROT MATS
// DETECTOR VECTORS
gettimeofday(&t, 0);
Kokkos::Tools::pushRegion("DETECTOR VECTORS");
if (db_cu_flags.update_detector || ALLOC) {
kokkostbx::transfer_vector2kokkos(m_fdet_vectors, local_det.fdet_vectors);
kokkostbx::transfer_vector2kokkos(m_sdet_vectors, local_det.sdet_vectors);
kokkostbx::transfer_vector2kokkos(m_odet_vectors, local_det.odet_vectors);
kokkostbx::transfer_vector2kokkos(m_pix0_vectors, local_det.pix0_vectors);
kokkostbx::transfer_vector2kokkos(m_close_distances, local_det.close_distances);
if (db_flags.verbose > 1)
printf("H2D Done copying detector vectors\n");
db_cu_flags.update_detector = false;
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_det, t, TIMERS.recording);
// END DETECTOR VECTORS
gettimeofday(&t, 0);
if (ALLOC || FORCE_COPY) {
kokkostbx::transfer_vector2kokkos(m_nominal_hkl, db_cryst.nominal_hkl);
kokkostbx::transfer_vector2kokkos(m_atom_data, db_cryst.atom_data);
if (db_flags.verbose > 1)
printf("H2D Done copying atom data\n");
kokkostbx::transfer_vector2kokkos(m_fpfdp, db_cryst.fpfdp);
kokkostbx::transfer_vector2kokkos(m_fpfdp_derivs, db_cryst.fpfdp_derivs);
if (db_flags.verbose > 1)
printf("H2D Done copying fprime and fdblprime\n");
}
easy_time(TIMERS.copy_nomhkl, t, TIMERS.recording);
// BEGIN UPDATE REFINEMENT
gettimeofday(&t, 0);
Kokkos::Tools::pushRegion("BEGIN UPDATE REFINMENT");
if (db_cu_flags.update_refine_flags || ALLOC) {
kokkostbx::transfer_vector2kokkos(m_refine_Umat, db_flags.refine_Umat);
kokkostbx::transfer_vector2kokkos(m_refine_Ncells, db_flags.refine_Ncells);
kokkostbx::transfer_vector2kokkos(m_refine_panel_origin, db_flags.refine_panel_origin);
kokkostbx::transfer_vector2kokkos(m_refine_panel_rot, db_flags.refine_panel_rot);
kokkostbx::transfer_vector2kokkos(m_refine_lambda, db_flags.refine_lambda);
kokkostbx::transfer_vector2kokkos(m_refine_Bmat, db_flags.refine_Bmat);
if (db_flags.verbose > 1)
printf("H2D Done copying refinement flags\n");
db_cu_flags.update_refine_flags=false;
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_flags, t, TIMERS.recording);
// END UPDATE REFINEMENT
// BEGIN Fhkl
gettimeofday(&t, 0);
Kokkos::Tools::pushRegion("Begin Fhkl");
if (db_cu_flags.update_Fhkl || ALLOC) {
kokkostbx::transfer_vector2kokkos(m_Fhkl, db_cryst.FhklLinear);
if (db_flags.complex_miller) {
kokkostbx::transfer_vector2kokkos(m_Fhkl2, db_cryst.Fhkl2Linear);
}
if (db_flags.verbose > 1)
printf("H2D Done copying step Fhkl\n");
db_cu_flags.update_Fhkl = false;
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_fhkl, t, TIMERS.recording);
// END Fhkl
// BEGIN panel derivative vecs
gettimeofday(&t, 0);
Kokkos::Tools::pushRegion("BEGIN panel derivative vecs");
if (db_cu_flags.update_panel_deriv_vecs || ALLOC) {
kokkostbx::transfer_vector2kokkos(m_dF_vecs, local_det.dF_vecs);
kokkostbx::transfer_vector2kokkos(m_dS_vecs, local_det.dS_vecs);
if (db_flags.verbose > 1)
printf("H2D Done copying step panel derivative vectors\n");
db_cu_flags.update_panel_deriv_vecs=false;
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_detderiv, t, TIMERS.recording);
// END panel derivative vecs
// BEGIN panels fasts slows
gettimeofday(&t, 0);
Kokkos::Tools::pushRegion("BEGIN panels fasts slows");
if (db_cu_flags.update_panels_fasts_slows || ALLOC || FORCE_COPY) {
kokkostbx::transfer_vector2kokkos(m_panels_fasts_slows, panels_fasts_slows);
if (db_flags.verbose > 1)
printf("H2D Done copying panels_fasts_slows\n");
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.copy_pfs, t, TIMERS.recording);
// END panels fasts slows
easy_time(TIMERS.cuda_copy_to_dev, t1, TIMERS.recording);
m_device_is_allocated = true;
::Kokkos::fence("after copy to device");
gettimeofday(&t1, 0);
int Npanels = local_det.fdet_vectors.size() / 3;
int num_atoms = db_cryst.atom_data.size() / 5;
// note cannot use atom data if fpfdp is 0, make this cleaner
if (db_cryst.fpfdp.size() == 0) {
num_atoms = 0;
}
bool aniso_eta = db_cryst.UMATS_RXYZ.size() != db_cryst.UMATS_RXYZ_prime.size();
bool use_nominal_hkl = !db_cryst.nominal_hkl.empty();
if ((db_flags.printout==false) &&
(db_flags.complex_miller==false) &&
(db_flags.compute_curvatures==false) &&
(m_refine_flag==REFINE_FCELL) &&
(db_flags.use_diffuse==false) &&
(db_flags.wavelength_img==false) &&
(db_flags.Fhkl_gradient_mode==false) &&
(db_flags.Fhkl_errors_mode==false) &&
(db_flags.using_trusted_mask==false) &&
(db_beam.Fhkl_channels.empty()==true) &&
(db_flags.Fhkl_have_scale_factors)==false) {
kokkos_sum_over_steps<false, false, false, REFINE_FCELL, false, false, false, false, false, true, false>(
Npix_to_model, m_panels_fasts_slows, m_floatimage, m_wavelenimage, m_d_Umat_images,
m_d2_Umat_images, m_d_Bmat_images, m_d2_Bmat_images, m_d_Ncells_images, m_d2_Ncells_images,
m_d_fcell_images, m_d2_fcell_images, m_d_eta_images, m_d2_eta_images, m_d_lambda_images,
m_d2_lambda_images, m_d_panel_rot_images, m_d2_panel_rot_images, m_d_panel_orig_images,
m_d2_panel_orig_images, m_d_fp_fdp_images, m_manager_dI, m_manager_dI2, db_steps.Nsteps,
db_flags.printout_fpixel, db_flags.printout_spixel, /*db_flags.printout,*/ db_cryst.default_F,
local_det.oversample, db_flags.oversample_omega, local_det.subpixel_size, local_det.pixel_size,
local_det.detector_thickstep, local_det.detector_thick, m_close_distances,
local_det.detector_attnlen, local_det.detector_thicksteps, local_beam.number_of_sources,
db_cryst.phisteps, (int) db_cryst.UMATS.size(), db_flags.use_lambda_coefficients,
local_beam.lambda0, local_beam.lambda1, to_mat3(db_cryst.eig_U), to_mat3(db_cryst.eig_O),
to_mat3(db_cryst.eig_B), to_mat3(db_cryst.RXYZ), m_dF_vecs, m_dS_vecs, m_UMATS_RXYZ, m_UMATS_RXYZ_prime,
m_UMATS_RXYZ_dbl_prime, m_RotMats, m_dRotMats, m_d2RotMats, m_UMATS, m_dB_Mats, m_dB2_Mats,
m_AMATS, m_source_X, m_source_Y, m_source_Z, m_source_lambda, m_source_I,
local_beam.kahn_factor, db_cryst.Na, db_cryst.Nb, db_cryst.Nc, db_cryst.Nd,
db_cryst.Ne, db_cryst.Nf, db_cryst.phi0, db_cryst.phistep,
to_vec3(db_cryst.spindle_vec), local_beam.polarization_axis, db_cryst.h_range,
db_cryst.k_range, db_cryst.l_range, db_cryst.h_max, db_cryst.h_min,
db_cryst.k_max, db_cryst.k_min, db_cryst.l_max, db_cryst.l_min,
db_cryst.dmin, db_cryst.fudge, /*db_flags.complex_miller,*/ db_flags.verbose,
db_flags.only_save_omega_kahn, db_flags.isotropic_ncells, /*db_flags.compute_curvatures,*/
m_Fhkl, m_Fhkl2, /*m_refine_flag,*/
m_fdet_vectors, m_sdet_vectors, m_odet_vectors,
m_pix0_vectors, db_flags.nopolar, db_flags.point_pixel, local_beam.fluence,
db_cryst.r_e_sqr, db_cryst.spot_scale, Npanels, aniso_eta, db_flags.no_Nabc_scale,
m_fpfdp, m_fpfdp_derivs, m_atom_data, num_atoms, m_nominal_hkl,
use_nominal_hkl, to_mat3(db_cryst.anisoU), to_mat3(db_cryst.anisoG), to_mat3(db_cryst.rotate_principal_axes),
/*db_flags.use_diffuse,*/ m_d_diffuse_gamma_images, m_d_diffuse_sigma_images,
db_flags.gamma_miller_units, /*db_flags.wavelength_img,*/
db_cryst.laue_group_num, db_cryst.stencil_size, /*db_flags.Fhkl_gradient_mode,*/
/*db_flags.Fhkl_errors_mode,*/ /*db_flags.using_trusted_mask,*/ /*db_beam.Fhkl_channels.empty(),*/
/*db_flags.Fhkl_have_scale_factors,*/ db_cryst.Num_ASU,
m_data_residual, m_data_variance,
m_data_freq, m_data_trusted,
m_FhklLinear_ASUid,
m_Fhkl_channels,
m_Fhkl_scale, m_Fhkl_scale_deriv,
db_cryst.xtal_shape==GAUSS_STAR,
db_cryst.xtal_shape==SQUARE
);
} else {
kokkos_sum_over_steps(
Npix_to_model, m_panels_fasts_slows, m_floatimage, m_wavelenimage, m_d_Umat_images,
m_d2_Umat_images, m_d_Bmat_images, m_d2_Bmat_images, m_d_Ncells_images, m_d2_Ncells_images,
m_d_fcell_images, m_d2_fcell_images, m_d_eta_images, m_d2_eta_images, m_d_lambda_images,
m_d2_lambda_images, m_d_panel_rot_images, m_d2_panel_rot_images, m_d_panel_orig_images,
m_d2_panel_orig_images, m_d_fp_fdp_images, m_manager_dI, m_manager_dI2, db_steps.Nsteps,
db_flags.printout_fpixel, db_flags.printout_spixel, db_flags.printout, db_cryst.default_F,
local_det.oversample, db_flags.oversample_omega, local_det.subpixel_size, local_det.pixel_size,
local_det.detector_thickstep, local_det.detector_thick, m_close_distances,
local_det.detector_attnlen, local_det.detector_thicksteps, local_beam.number_of_sources,
db_cryst.phisteps, db_cryst.UMATS.size(), db_flags.use_lambda_coefficients,
local_beam.lambda0, local_beam.lambda1, to_mat3(db_cryst.eig_U), to_mat3(db_cryst.eig_O),
to_mat3(db_cryst.eig_B), to_mat3(db_cryst.RXYZ), m_dF_vecs, m_dS_vecs, m_UMATS_RXYZ, m_UMATS_RXYZ_prime,
m_UMATS_RXYZ_dbl_prime, m_RotMats, m_dRotMats, m_d2RotMats, m_UMATS, m_dB_Mats, m_dB2_Mats,
m_AMATS, m_source_X, m_source_Y, m_source_Z, m_source_lambda, m_source_I,
local_beam.kahn_factor, db_cryst.Na, db_cryst.Nb, db_cryst.Nc, db_cryst.Nd,
db_cryst.Ne, db_cryst.Nf, db_cryst.phi0, db_cryst.phistep,
to_vec3(db_cryst.spindle_vec), local_beam.polarization_axis, db_cryst.h_range,
db_cryst.k_range, db_cryst.l_range, db_cryst.h_max, db_cryst.h_min,
db_cryst.k_max, db_cryst.k_min, db_cryst.l_max, db_cryst.l_min,
db_cryst.dmin, db_cryst.fudge, db_flags.complex_miller, db_flags.verbose,
db_flags.only_save_omega_kahn, db_flags.isotropic_ncells, db_flags.compute_curvatures,
m_Fhkl, m_Fhkl2, m_refine_flag,
m_fdet_vectors, m_sdet_vectors, m_odet_vectors,
m_pix0_vectors, db_flags.nopolar, db_flags.point_pixel, local_beam.fluence,
db_cryst.r_e_sqr, db_cryst.spot_scale, Npanels, aniso_eta, db_flags.no_Nabc_scale,
m_fpfdp, m_fpfdp_derivs, m_atom_data, num_atoms, m_nominal_hkl,
use_nominal_hkl, to_mat3(db_cryst.anisoU), to_mat3(db_cryst.anisoG), to_mat3(db_cryst.rotate_principal_axes),
db_flags.use_diffuse, m_d_diffuse_gamma_images, m_d_diffuse_sigma_images,
db_flags.gamma_miller_units, db_flags.wavelength_img,
db_cryst.laue_group_num, db_cryst.stencil_size, db_flags.Fhkl_gradient_mode,
db_flags.Fhkl_errors_mode, db_flags.using_trusted_mask, db_beam.Fhkl_channels.empty(),
db_flags.Fhkl_have_scale_factors, db_cryst.Num_ASU,
m_data_residual, m_data_variance,
m_data_freq, m_data_trusted,
m_FhklLinear_ASUid,
m_Fhkl_channels,
m_Fhkl_scale, m_Fhkl_scale_deriv,
db_cryst.xtal_shape==GAUSS_STAR,
db_cryst.xtal_shape==SQUARE
);
}
::Kokkos::fence("after kernel call");
if (db_flags.verbose > 1)
printf("KERNEL_COMPLETE gpu_sum_over_steps\n");
easy_time(TIMERS.cuda_kernel, t1, TIMERS.recording);
gettimeofday(&t1, 0);
// COPY BACK FROM DEVICE
Kokkos::Tools::pushRegion("COPY BACK FROM DEVICE");
kokkostbx::transfer_kokkos2vector(floatimage, m_floatimage);
if (db_flags.wavelength_img) {
kokkostbx::transfer_kokkos2vector(d_image.wavelength, m_wavelenimage);
}
if (db_flags.refine_fcell) {
kokkostbx::transfer_kokkos2vector(d_image.fcell, m_d_fcell_images);
kokkostbx::transfer_kokkos2vector(d2_image.fcell, m_d2_fcell_images);
}
if (db_flags.Fhkl_gradient_mode){
if (db_flags.Fhkl_errors_mode){
kokkostbx::transfer_kokkos2vector(d_image.Fhkl_hessian, m_Fhkl_scale_deriv);
}
else{
kokkostbx::transfer_kokkos2vector(d_image.Fhkl_scale_deriv, m_Fhkl_scale_deriv);
}
}
if (std::count(db_flags.refine_Umat.begin(), db_flags.refine_Umat.end(), true) > 0) {
kokkostbx::transfer_kokkos2vector(d_image.Umat, m_d_Umat_images);
kokkostbx::transfer_kokkos2vector(d2_image.Umat, m_d2_Umat_images);
}
if (std::count(db_flags.refine_panel_rot.begin(), db_flags.refine_panel_rot.end(), true) > 0) {
kokkostbx::transfer_kokkos2vector(d_image.panel_rot, m_d_panel_rot_images);
}
if (std::count(db_flags.refine_panel_origin.begin(), db_flags.refine_panel_origin.end(), true) >
0) {
kokkostbx::transfer_kokkos2vector(d_image.panel_orig, m_d_panel_orig_images);
}
if (db_flags.refine_eta) {
kokkostbx::transfer_kokkos2vector(d_image.eta, m_d_eta_images);
kokkostbx::transfer_kokkos2vector(d2_image.eta, m_d2_eta_images);
}
if (std::count(db_flags.refine_Ncells.begin(), db_flags.refine_Ncells.end(), true) > 0 ||
db_flags.refine_Ncells_def) {
kokkostbx::transfer_kokkos2vector(d_image.Ncells, m_d_Ncells_images);
kokkostbx::transfer_kokkos2vector(d2_image.Ncells, m_d2_Ncells_images);
}
if (db_flags.refine_diffuse) {
kokkostbx::transfer_kokkos2vector(d_image.diffuse_gamma, m_d_diffuse_gamma_images);
kokkostbx::transfer_kokkos2vector(d_image.diffuse_sigma, m_d_diffuse_sigma_images);
}
if (std::count(db_flags.refine_Bmat.begin(), db_flags.refine_Bmat.end(), true) > 0) {
kokkostbx::transfer_kokkos2vector(d_image.Bmat, m_d_Bmat_images);
kokkostbx::transfer_kokkos2vector(d2_image.Bmat, m_d2_Bmat_images);
}
if (std::count(db_flags.refine_lambda.begin(), db_flags.refine_lambda.end(), true) > 0) {
kokkostbx::transfer_kokkos2vector(d_image.lambda, m_d_lambda_images);
}
if (db_flags.refine_fp_fdp) {
kokkostbx::transfer_kokkos2vector(d_image.fp_fdp, m_d_fp_fdp_images);
}
Kokkos::Tools::popRegion();
easy_time(TIMERS.cuda_copy_from_dev, t1, TIMERS.recording);
::Kokkos::fence("After copy to host");
Kokkos::Tools::popRegion();
}