release(3.18.3): freshness self-heal + commit-reindex + cross-lens doc graph

Bundles the unreleased fixes since v3.18.2:
- 037b769 self-healing graph memo + commit-triggered re-analyze
- e2e774b/aa733ec wiki-graph PG+FS union + [[wikilink]] body edges
- d2c2e39 cross-lens documentation graph (WIKI lens)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

Author: cdeust

.claude-plugin/marketplace.json

@@ -6,22 +6,22 @@
   },
   "metadata": {
     "description": "Persistent memory and cognitive profiling plugins for Claude Code",
-    "version": "3.18.2"
+    "version": "3.18.3"
   },
   "plugins": [
     {
       "name": "cortex",
       "source": "./",
       "description": "Persistent memory and cognitive profiling for Claude Code — thermodynamic memory with heat/decay, intent-aware retrieval, biological plasticity, codebase intelligence, and cognitive profiling. 49 MCP tools with enriched schemas. PostgreSQL + pgvector in CLI mode; automatic SQLite fallback in Cowork/sandboxed mode. v3.17.0 — autonomous per-project wiki: SessionStart auto-spawns a 6-hour consolidate cycle; a headless `claude -p` worker drains the curation-gap queue, calls codebase-intelligence MCP tools to ground each section in the real call graph, and authors missing anchor pages (architecture / services / api / data-flow / operations / decisions / PRD) per project from the source tree. 15 canonical scopes × 13 file sections; per-project dashboards under `wiki/_dashboards/`. Mermaid diagrams have a 🔍 lens with zoom + pan. Workflow graph with caller-qualified CALLS chains rendering full method-to-method dependencies (native tree-sitter, no AP required). Side panel humanized for non-technical users. Ingests codebase analysis (ai-automatised-pipeline) and PRDs (prd-spec-generator) into wiki + memory + knowledge graph. Docker image available.",
-      "version": "3.18.2",
+      "version": "3.18.3",
       "author": {
         "name": "Clement Deust",
         "email": "admin@ai-architect.tools"
       },
       "homepage": "https://github.com/cdeust/Cortex",
       "repository": "https://github.com/cdeust/Cortex",
       "license": "MIT",
-      "version_note": "3.18.2 — PRD ingestion fixed + grounded: ingest_prd now calls prd-gen's get_pipeline_state with the correct run_id/format (the pipeline_id source path was broken) and records prd-gen quality history; part of the AP↔prd-gen↔Cortex grounding loop (codebase→spec→memory). 3.18.1 — HUD shows true store counts (memories/entities/synapses) via /api/stats instead of loaded-graph nodes; impact panel refactored to use automatised-pipeline's typed tools (get_context/get_impact) for full direction incl. implements/uses + community/process blast radius; AP MCP resolved from installed_plugins.json (compiled binary, not bin/* glob); HTML-attribute XSS escaping + non-security node-id hash. 3.18.0 — live execution-trace graph in cortex-visualize: domain→session→chain (no snapshot), galaxy-style type-banded clusters, file impact panel wired to the AP code graph (caller/callee direction, causal chains, per-file git versions). Loopback-only host guard retained (GHSA-gvpp-v77h-5w8g).",
+      "version_note": "3.18.3 — codebase-graph freshness made trustable: find_cached_graph self-heals (validates the graph still exists on disk + picks the most-recent valid memo) so a deleted graph can no longer make ingest_codebase silently project an empty graph; new post_commit_reindex PostToolUse hook re-analyses on commits that touch indexable source (detached, 120s-coalesced) closing the SessionStart-TTL staleness gap. Cross-lens documentation graph (WIKI lens) in cortex-visualize: wiki pages as scope-clustered nodes with typed wiki_link + provenance + concept co-occurrence + cross-lens entity/symbol edges; wiki_graph unions PostgreSQL + filesystem page sources and derives [[wikilinks]] from page bodies. 3.18.2 — PRD ingestion fixed + grounded: ingest_prd now calls prd-gen's get_pipeline_state with the correct run_id/format (the pipeline_id source path was broken) and records prd-gen quality history; part of the AP↔prd-gen↔Cortex grounding loop (codebase→spec→memory). 3.18.1 — HUD shows true store counts (memories/entities/synapses) via /api/stats instead of loaded-graph nodes; impact panel refactored to use automatised-pipeline's typed tools (get_context/get_impact) for full direction incl. implements/uses + community/process blast radius; AP MCP resolved from installed_plugins.json (compiled binary, not bin/* glob); HTML-attribute XSS escaping + non-security node-id hash. 3.18.0 — live execution-trace graph in cortex-visualize: domain→session→chain (no snapshot), galaxy-style type-banded clusters, file impact panel wired to the AP code graph (caller/callee direction, causal chains, per-file git versions). Loopback-only host guard retained (GHSA-gvpp-v77h-5w8g).",
       "keywords": ["memory", "cognitive-profiling", "mcp", "claude-code", "cortex", "knowledge-graph", "codebase-analysis", "docker"],
       "category": "productivity",
       "runtime": ["cli", "cowork"],

.claude-plugin/plugin.json

@@ -1,7 +1,7 @@
 {
   "name": "cortex",
   "description": "Persistent memory for Claude Code — remembers across sessions automatically. Install and forget. Scientific retrieval backed by 41 published papers.",
-  "version": "3.18.2",
+  "version": "3.18.3",
   "author": {
     "name": "Clement Deust",
     "email": "admin@ai-architect.tools"

README.md

@@ -8,7 +8,7 @@
   <img src="https://img.shields.io/badge/python-3.10+-blue.svg" alt="Python 3.10+">
   <img src="https://img.shields.io/badge/tests-2500_passing-brightgreen.svg" alt="Tests">
   <img src="https://img.shields.io/badge/citations-45_papers-orange.svg" alt="Citations">
-  <img src="https://img.shields.io/badge/version-3.18.2-brightgreen.svg" alt="Version 3.18.2">
+  <img src="https://img.shields.io/badge/version-3.18.3-brightgreen.svg" alt="Version 3.18.3">
   <a href="https://glama.ai/mcp/servers/cdeust/Cortex"><img src="https://glama.ai/mcp/servers/cdeust/Cortex/badges/score.svg" alt="Glama score: security A, license A"></a>
 </p>
 

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "neuro-cortex-memory"
-version = "3.18.2"
+version = "3.18.3"
 description = "Scientifically-grounded memory system based on computational neuroscience research"
 readme = "README.md"
 license = "MIT"