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Update Example 2 data and lineage with typo corrections
- Refresh Example2.xlsx with corrected values - Regenerate rwd-lineage.xml from RWDLineageFull-Table (source row corrections for AE entries) - Update AE.csv and LB.csv SDTM data files - Update test to read directly from Excel instead of a derived CSV Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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‎examples/example2/Example2.xlsx‎

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‎examples/example2/data/define/rwd-lineage.xml‎

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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>9</RowIndex>
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<RowIndex>10</RowIndex>
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<ColumnName>LBTEST</ColumnName>
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</Coordinate>
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</Source>
@@ -1042,7 +1042,7 @@
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>10</RowIndex>
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<RowIndex>11</RowIndex>
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<ColumnName>LBTEST</ColumnName>
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</Coordinate>
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</Source>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>11</RowIndex>
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<RowIndex>12</RowIndex>
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<ColumnName>LBTEST</ColumnName>
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</Coordinate>
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</Source>
@@ -1076,7 +1076,7 @@
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>9</RowIndex>
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<RowIndex>10</RowIndex>
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<ColumnName>LBSTRES</ColumnName>
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</Coordinate>
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</Source>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>10</RowIndex>
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<RowIndex>11</RowIndex>
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<ColumnName>LBSTRES</ColumnName>
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</Coordinate>
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</Source>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>11</RowIndex>
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<RowIndex>12</RowIndex>
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<ColumnName>LBSTRES</ColumnName>
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</Coordinate>
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</Source>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>9</RowIndex>
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<RowIndex>10</RowIndex>
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<ColumnName>LBSTNRHI</ColumnName>
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</Coordinate>
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</Source>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>10</RowIndex>
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<RowIndex>11</RowIndex>
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<ColumnName>LBSTNRHI</ColumnName>
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</Coordinate>
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</Source>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>11</RowIndex>
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<RowIndex>12</RowIndex>
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<ColumnName>LBSTNRHI</ColumnName>
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</Coordinate>
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</Source>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>9</RowIndex>
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<RowIndex>10</RowIndex>
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<ColumnName>LBNRIND</ColumnName>
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</Coordinate>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>10</RowIndex>
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<RowIndex>11</RowIndex>
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<ColumnName>LBNRIND</ColumnName>
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</Coordinate>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>11</RowIndex>
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<RowIndex>12</RowIndex>
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<ColumnName>LBNRIND</ColumnName>
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</Coordinate>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>9</RowIndex>
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<RowIndex>10</RowIndex>
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<ColumnName>LBDTC</ColumnName>
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</Coordinate>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>10</RowIndex>
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<RowIndex>11</RowIndex>
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<ColumnName>LBDTC</ColumnName>
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</Coordinate>
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<Source>
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<Coordinate storage="Filesystem" structure="Tabular">
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<URI>https://github.com/cdisc-org/DataExchange-RWD-Lineage/blob/main/examples/example2/data/sdtm/LB.csv</URI>
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<RowIndex>11</RowIndex>
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<RowIndex>12</RowIndex>
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<ColumnName>LBDTC</ColumnName>
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</Coordinate>
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</Source>

‎examples/example2/data/sdtm/AE.csv‎

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@@ -1,2 +1,2 @@
11
USUBJID,AESEQ,AETERM,AEDECOD,AELLTCD,AESER,AEREL,AESTDTC
2-
002,1,NA,Hepatic enzyme increased,10060795,N,N,11/6/2025
2+
002,1,NA,Hepatic enzyme increased,10060795,N,N,2025-11-06

‎examples/example2/data/sdtm/LB.csv‎

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Original file line numberDiff line numberDiff line change
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11
USUBJID,LBSEQ,LBTESTCD,LBTEST,LBDTC,LBORRES,LBORRESU,LBSTRES,LBSTRESU,LBSTNRLO,LBSTNRHI,LBNRIND
2-
001,1,ALT,Alanine Aminotransferase,2/10/2024,0.35,µkat/L,21, U/L,7,55,NORMAL
3-
001,2,AST,Aspartate Aminotransferase,2/10/2024,0.58,µkat/L,35, U/L,8,48,NORMAL
4-
001,3,ALP,Alkaline Phosphatase,2/10/2024,0.80,µkat/L,48, U/L,40,129,NORMAL
5-
001,4,ALT,Alanine Aminotransferase,3/25/2025,0.53,µkat/L,32, U/L,7,55,NORMAL
6-
001,5,AST,Aspartate Aminotransferase,3/25/2025,0.72,µkat/L,43, U/L,8,48,NORMAL
7-
001,6,ALP,Alkaline Phosphatase,3/25/2025,1.79,µkat/L,107, U/L,40,129,NORMAL
8-
002,1,ALT,Alanine Aminotransferase,10/25/2024,0.87,µkat/L,52, U/L,7,55,NORMAL
9-
002,2,AST,Aspartate Aminotransferase,10/25/2024,0.78,µkat/L,47, U/L,8,48,NORMAL
10-
002,3,ALP,Alkaline Phosphatase,10/25/2024,2.14,µkat/L,128, U/L,40,129,NORMAL
11-
002,4,ALT,Alanine Aminotransferase,11/6/2025,1.00,µkat/L,60, U/L,7,55,HIGH
12-
002,5,AST,Aspartate Aminotransferase,11/6/2025,0.82,µkat/L,49, U/L,8,48,HIGH
13-
002,6,ALP,Alkaline Phosphatase,11/6/2025,2.19,µkat/L,131, U/L,40,129,HIGH
2+
001,1,ALT,Alanine Aminotransferase,2024-02-10,0.35,µkat/L,21, U/L,7,55,NORMAL
3+
001,2,AST,Aspartate Aminotransferase,2024-02-10,0.58,µkat/L,35, U/L,8,48,NORMAL
4+
001,3,ALP,Alkaline Phosphatase,2024-02-10,0.80,µkat/L,48, U/L,40,129,NORMAL
5+
001,4,ALT,Alanine Aminotransferase,2025-03-25,0.53,µkat/L,32, U/L,7,55,NORMAL
6+
001,5,AST,Aspartate Aminotransferase,2025-03-25,0.72,µkat/L,43, U/L,8,48,NORMAL
7+
001,6,ALP,Alkaline Phosphatase,2025-03-25,1.79,µkat/L,107, U/L,40,129,NORMAL
8+
002,1,ALT,Alanine Aminotransferase,2024-10-25,0.87,µkat/L,52, U/L,7,55,NORMAL
9+
002,2,AST,Aspartate Aminotransferase,2024-10-25,0.78,µkat/L,47, U/L,8,48,NORMAL
10+
002,3,ALP,Alkaline Phosphatase,2024-10-25,2.14,µkat/L,128, U/L,40,129,NORMAL
11+
002,4,ALT,Alanine Aminotransferase,2025-11-06,1.00,µkat/L,60, U/L,7,55,HIGH
12+
002,5,AST,Aspartate Aminotransferase,2025-11-06,0.82,µkat/L,49, U/L,8,48,HIGH
13+
002,6,ALP,Alkaline Phosphatase,2025-11-06,2.19,µkat/L,131, U/L,40,129,HIGH

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