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rule.py
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205 lines (184 loc) · 8.53 KB
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from typing import List
from cdisc_rules_engine.enums.optional_condition_parameters import (
OptionalConditionParameters,
)
from cdisc_rules_engine.enums.rule_types import RuleTypes
from cdisc_rules_engine.enums.sensitivity import Sensitivity
class Rule:
"""
This class represents a rule DB record.
A rule DB record represents a proprietary rule, but
the structure will match the CDISC rules format
"""
def __init__(self, record_params: dict):
self.core_id: str = record_params["core_id"]
self.reference: List[dict] = record_params["reference"]
self.sensitivity: Sensitivity = record_params["sensitivity"]
self.executability: str = record_params["executability"]
self.category: str = record_params["category"]
self.author: str = record_params["author"]
self.description: str = record_params["description"]
self.authority: dict = record_params["authority"]
self.standards: dict = record_params["standards"]
self.classes: dict = record_params.get("classes")
self.domains: dict = record_params.get("domains")
self.datasets: dict = record_params.get("datasets")
self.entities: dict = record_params.get("entities")
self.rule_type: RuleTypes = record_params["rule_type"]
self.operations: List[dict] = record_params.get("operations")
self.conditions: dict = record_params["conditions"]
self.actions: dict = record_params["actions"]
self.output_variables: dict = record_params.get("output variables")
self.grouping_variables: List[str] = record_params.get("grouping_variables", [])
@classmethod
def _get_key(cls, obj: dict, space_key: str, default=None):
"""Get a value by key, supporting both space-format ('Rule Type') and
underscore-format ('Rule_Type') for backward compatibility with the
CDISC Library API which returns underscore keys."""
if space_key in obj:
return obj[space_key]
return obj.get(space_key.replace(" ", "_"), default)
@classmethod
def from_cdisc_metadata(cls, rule_metadata: dict) -> dict:
if cls.is_cdisc_rule_metadata(rule_metadata):
authorities = rule_metadata.get("Authorities", [])
scope = rule_metadata.get("Scope", {})
outcome = rule_metadata.get("Outcome", {})
executable_rule = {
"core_id": rule_metadata.get("Core", {}).get("Id"),
"author": "CDISC",
"reference": cls.parse_references(authorities),
"sensitivity": rule_metadata.get("Sensitivity"),
"executability": (rule_metadata.get("Executability") or "").lower(),
"description": rule_metadata.get("Description"),
"authorities": authorities,
"standards": cls.parse_standards(authorities),
"classes": scope.get("Classes"),
"domains": scope.get("Domains"),
"entities": scope.get("Entities"),
"rule_type": cls._get_key(rule_metadata, "Rule Type"),
"conditions": cls.parse_conditions(rule_metadata.get("Check")),
"actions": cls.parse_actions(outcome),
"use_case": cls._get_key(scope, "Use Case"),
"data_structures": cls._get_key(scope, "Data Structures"),
"status": rule_metadata.get("Core", {}).get("Status", {}),
}
if "Operations" in rule_metadata:
executable_rule["operations"] = rule_metadata.get("Operations")
match_datasets = cls._get_key(rule_metadata, "Match Datasets")
if match_datasets is not None:
executable_rule["datasets"] = cls.parse_datasets(match_datasets)
output_variables = cls._get_key(outcome, "Output Variables")
if output_variables is not None:
executable_rule["output_variables"] = output_variables
grouping_variables = cls._get_key(rule_metadata, "Grouping Variables")
if grouping_variables is not None:
executable_rule["grouping_variables"] = grouping_variables
return executable_rule
else:
return rule_metadata
@classmethod
def parse_standards(cls, authorities: List[dict]) -> List[dict]:
standards = []
for authority in authorities:
for standard in authority.get("Standards", []):
standards.append(
{
"Name": standard.get("Name"),
"Version": standard.get("Version"),
"Substandard": standard.get("Substandard"),
}
)
return standards
@classmethod
def parse_references(cls, authorities: List[dict]) -> list:
references = []
for authority in authorities:
for standard in authority.get("Standards", []):
references.append(standard.get("References"))
return references
@classmethod
def is_cdisc_rule_metadata(cls, rule_metadata: dict) -> bool:
return "Core" in rule_metadata
@classmethod
def parse_conditions(cls, conditions: dict | str) -> dict | str:
if not conditions:
raise ValueError("No check data provided")
if isinstance(conditions, str):
return conditions
all_conditions = conditions.get("all")
any_conditions = conditions.get("any")
not_condition = conditions.get("not")
conditions_json = {}
if all_conditions:
conditions_json["all"] = cls.build_conditions(all_conditions)
if any_conditions:
conditions_json["any"] = cls.build_conditions(any_conditions)
if not_condition:
conditions_json["not"] = cls.parse_conditions(not_condition)
return conditions_json
@classmethod
def build_conditions(cls, conditions_data: List[dict]) -> dict:
function = "get_dataset"
conditions = []
for condition in conditions_data:
if "all" in condition:
conditions.append({"all": cls.build_conditions(condition.get("all"))})
elif "any" in condition:
conditions.append({"any": cls.build_conditions(condition.get("any"))})
elif "not" in condition:
conditions.append({"not": cls.parse_conditions(condition.get("not"))})
else:
conditions.append(cls.build_condition(condition, function))
return conditions
@classmethod
def build_condition(cls, condition: dict, variable_function: str) -> dict:
data = {
"name": variable_function,
"operator": condition.get("operator"),
"value": {
"comparator": condition.get("value"),
},
}
if condition.get("name"):
data["value"]["target"] = condition.get("name")
if condition.get("regex"):
data["value"]["regex"] = condition.get("regex")
if "variables" in condition:
data["variables"] = condition["variables"]
if "negative" in condition:
data["value"]["negative"] = condition.get("negative")
for optional_parameter in OptionalConditionParameters.values():
if optional_parameter in condition:
data["value"][optional_parameter] = condition.get(optional_parameter)
return data
@classmethod
def parse_actions(cls, actions_data: dict) -> List[dict]:
if not actions_data:
raise ValueError("No actions data provided")
action = "generate_dataset_error_objects"
return [{"name": action, "params": {"message": actions_data.get("Message")}}]
@classmethod
def parse_datasets(cls, match_key_data: List[dict]) -> List[dict]:
if not match_key_data:
return None
datasets = []
for data in match_key_data:
join_data = {
"domain_name": data.get("Name"),
"match_key": [
(
key
if isinstance(key, str)
else {k.lower(): v for k, v in key.items()}
)
for key in data.get("Keys", [])
],
"wildcard": data.get("Wildcard", "**"),
}
if "Join_Type" in data:
join_data["join_type"] = data.get("Join_Type")
if "Child" in data:
join_data["child"] = data.get("Child")
datasets.append(join_data)
return datasets