Added source code

Author: dwest77a

docs/source/index.rst

@@ -25,8 +25,8 @@ Install the CCI STAC tools by running ``pip install -e .`` after cloning this re
    The CCI tools requires a virtual environment using python 3.11 or later. Be sure you have a compatible python environment activated before installing the tools.
 
 .. toctree::
-   :maxdepth: 1
-   :caption: Sections:
+   :caption: Sections
+   
    Opensearch & MOLES <opensearch>
    CCI STAC Collections Explained <collections>
    Using The Tools <tools>

docs/source/shell.rst

@@ -0,0 +1,3 @@
+=================================
+The STAC Shell and Custom Scripts
+=================================

docs/source/source.rst

@@ -1,3 +1,35 @@
 ==================================
 Source Code for the CCI STAC Tools
-==================================
+==================================
+
+Collections Tools
+-----------------
+
+.. automodule:: cci_tools.collection.main
+    :members:
+
+Elasticsearch queries
+---------------------
+
+.. automodule:: cci_tools.elasticsearch.queries
+    :members:
+
+File readers
+------------
+
+.. automodule:: cci_tools.readers.file
+    :members:
+.. automodule:: cci_tools.readers.geotiff
+    :members:
+.. automodule:: cci_tools.readers.s3
+    :members:
+.. automodule:: cci_tools.readers.xarray
+    :members:
+
+STAC Creations
+--------------
+
+.. automodule:: cci_tools.stac.create_record
+    :members:
+.. automodule:: cci_tools.stac.post_record
+    :members: