Update new generate-cli-docs.mjs to new cli location

Author: JasonAtClockwork

docs/scripts/generate-cli-docs.mjs

@@ -45,7 +45,8 @@ async function main() {
     repoRoot,
     'docs',
     'docs',
-    '00500-cli-reference',
+    '09000-reference',
+    '00100-cli-reference',
     '00100-cli-reference.md',
   );