mimic-code/mimic-iii/concepts/firstday/urine_output_first_day.sql at main · codingpot/mimic-code · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
-- ------------------------------------------------------------------
-- Purpose: Create a view of the urine output for each ICUSTAY_ID over the first 24 hours.
-- ------------------------------------------------------------------

select
  -- patient identifiers
  ie.subject_id, ie.hadm_id, ie.icustay_id

  -- volumes associated with urine output ITEMIDs
  , sum(
      -- we consider input of GU irrigant as a negative volume
      case
        when oe.itemid = 227488 and oe.value > 0 then -1*oe.value
        else oe.value
    end) as urineoutput
FROM `physionet-data.mimiciii_clinical.icustays` ie
-- Join to the outputevents table to get urine output
left join `physionet-data.mimiciii_clinical.outputevents` oe
-- join on all patient identifiers
on ie.subject_id = oe.subject_id and ie.hadm_id = oe.hadm_id and ie.icustay_id = oe.icustay_id
-- and ensure the data occurs during the first day
and oe.charttime between ie.intime and (DATETIME_ADD(ie.intime, INTERVAL '1' DAY)) -- first ICU day
where itemid in
(
-- these are the most frequently occurring urine output observations in CareVue
40055, -- "Urine Out Foley"
43175, -- "Urine ."
40069, -- "Urine Out Void"
40094, -- "Urine Out Condom Cath"
40715, -- "Urine Out Suprapubic"
40473, -- "Urine Out IleoConduit"
40085, -- "Urine Out Incontinent"
40057, -- "Urine Out Rt Nephrostomy"
40056, -- "Urine Out Lt Nephrostomy"
40405, -- "Urine Out Other"
40428, -- "Urine Out Straight Cath"
40086,--	Urine Out Incontinent
40096, -- "Urine Out Ureteral Stent #1"
40651, -- "Urine Out Ureteral Stent #2"

-- these are the most frequently occurring urine output observations in MetaVision
226559, -- "Foley"
226560, -- "Void"
226561, -- "Condom Cath"
226584, -- "Ileoconduit"
226563, -- "Suprapubic"
226564, -- "R Nephrostomy"
226565, -- "L Nephrostomy"
226567, --	Straight Cath
226557, -- R Ureteral Stent
226558, -- L Ureteral Stent
227488, -- GU Irrigant Volume In
227489  -- GU Irrigant/Urine Volume Out
)
group by ie.subject_id, ie.hadm_id, ie.icustay_id
order by ie.subject_id, ie.hadm_id, ie.icustay_id;