replace climate-cms.org with coecms.github.io

Author: Holger Wolff

.github/workflows/deploy.yml

@@ -41,4 +41,4 @@ jobs:
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: _build/html
-        cname: climate-cms.org
+        cname: coecms.github.io

README.md

@@ -3,7 +3,7 @@ CMS Blog
 
 The blog is viewable here:
 
-http://climate-cms.org
+http://coecms.github.io
 
 See the jupyter-book docs for info on creating posts - https://jupyterbook.org/intro.html
 
@@ -25,7 +25,7 @@ To create a new blog post:
 1. Delete `branch`
 
 ---
-The new blog post should appear within a few minutes at http://climate-cms.org 
+The new blog post should appear within a few minutes at http://coecms.github.io 
 
 If it doesn't, check under "Github Pages" here for error messages:
 

posts/2021-11-02-pyproj-regrid.ipynb

@@ -7,7 +7,7 @@
     "# Regridding from one coordinate system to another with pyproj\n",
     "**Aidan Heerdegen, CLEX CMS**\n",
     "\n",
-    "This post follows on from a [previous post](http://climate-cms.org/2021/10/01/pyproj.html) which covered converting between coordinate systems with [pyproj](https://pyproj4.github.io/pyproj/stable/).\n",
+    "This post follows on from a [previous post](http://coecms.github.io/2021/10/01/pyproj.html) which covered converting between coordinate systems with [pyproj](https://pyproj4.github.io/pyproj/stable/).\n",
     "\n",
     "Some cells have `jupyter` magic `%%time` commands for no other reason than to give an indication of how long these operations typically take. Having an expectation of how long something should take is a useful metric for knowing when something is not working correctly.\n",
     "\n"

posts/2022-04-26-storage-where-what-why-how.md

@@ -37,7 +37,7 @@ To query usage for an on-disk file system, NCI provides commands which report on
 nci-files-report --group project_id
 ```
 
-CMS has put in place a dashboard for visualising a range of accounting statistics for CLEX. Please contact CMS for the passowrd to access [this server](http://climate-cms.org/dashboard/) 
+CMS has put in place a dashboard for visualising a range of accounting statistics for CLEX. Please contact CMS for the passowrd to access [this server](http://coecms.github.io/dashboard/) 
 
 ![Dashboard](../images/dashboard_w40.PNG "Dashboard")
 

posts/2022-10-26-Data-Quarantine.md

@@ -64,6 +64,6 @@ For more information on these commands:  https://nci.org.au/sites/default/files/
 
 If there is data that you need to keep long term then there are a couple of things that need to be considered. You can publish your data if you have processed a lot of raw data and it doesn't already exist on the NCI system or you can move data to the tape system for long-term storage. 
 
-Please have a look at this blog: https://climate-cms.org/posts/2022-04-26-storage-where-what-why-how.html
+Please have a look at this blog: https://coecms.github.io/posts/2022-04-26-storage-where-what-why-how.html
 
 Data can exist for longer on gdata than on scratch but for longer term you will need to decide on a method from the above link.

posts/2023-02-27-introducing-new-conda.md

@@ -56,7 +56,7 @@ The typical `analysis3` workflow comprising python scripts or jupyter notebooks
 ## Key differences between `conda_concept` and `conda`
 The key difference of the approach used by the `conda_concept` environments is the use of singularity's ability to manage squashfs file systems. A squashfs can be thought of a something like a tar file that can be accessed as if it were an entirely new file system. The obvious advantage of placing a conda environment in a squashfs is that it reduces the file count of the entire environment on `/g/data` to one.
 
-The drawback of using singularity to manage the squashfs is that containers have a number of restrictions placed on them for security reasons, (e.g. the `newgrp`, `switchproj` and `qcat` commands cannot be run from inside a container). Because of this, once the module is loaded, the user is kept out of the containerised environment unless a command that exists inside the container is run. This is accomplished by the use of a 'launcher' script that runs `singularity` and executes the command from within the container. For more details on this, see the [CMS Wiki page](https://climate-cms.org/cms-wiki/resources/resources-conda-setup.html). This leads to known issues with the environment.
+The drawback of using singularity to manage the squashfs is that containers have a number of restrictions placed on them for security reasons, (e.g. the `newgrp`, `switchproj` and `qcat` commands cannot be run from inside a container). Because of this, once the module is loaded, the user is kept out of the containerised environment unless a command that exists inside the container is run. This is accomplished by the use of a 'launcher' script that runs `singularity` and executes the command from within the container. For more details on this, see the [CMS Wiki page](https://coecms.github.io/cms-wiki/resources/resources-conda-setup.html). This leads to known issues with the environment.
 
 ### Known Issues
  * The path to the python executable within a conda environment cannot be used as the shbang (e.g. `#!/g/data/hh5/public/apps/cms_conda/envs/analysis3/bin/python3` on the first line of script) as the executable does not exist outside of the container. Instead, use the launcher script symlink: `#!/g/data/hh5/public/apps/cms_conda_scripts/analysis3.d/bin/python3`, which launches the container and runs the script from inside of it.

posts/2023-07-05-select-region-shapefile.ipynb

@@ -1953,7 +1953,7 @@
    "id": "55f86961-a6e6-427d-99a2-7cee39a3530a",
    "metadata": {},
    "source": [
-    "We open the files using preprocess argument to select our region of interest from each file before concatenating them. See this [blog](https://climate-cms.org/posts/2023-06-22-mfdataset-preprocess.html) for more information on preprocess."
+    "We open the files using preprocess argument to select our region of interest from each file before concatenating them. See this [blog](https://coecms.github.io/posts/2023-06-22-mfdataset-preprocess.html) for more information on preprocess."
    ]
   },
   {

posts/2024-06-05-mixing-python-envs.md

@@ -49,7 +49,7 @@ reproducibility is not necessary. The downside with this approach is that it can
 is updated to every 3 months as new environments are released. For example, if you load `conda/analysis3` today,
 you'll get the `conda/analysis3-24.01` environment. If you were to load the same module a couple of months from
 now, you'll get the `conda/analysis3-24.04` environment. Our policies around updating the conda environments
-can be found [here](https://climate-cms.org/cms-wiki/services/services-conda.html). As time goes on, your
+can be found [here](https://coecms.github.io/cms-wiki/services/services-conda.html). As time goes on, your
 locally installed package will get further and further out of date, and could potentially conflict with newer
 packages installed in updated analysis environments.