Added parsers for CWL input files (#199)

This commit adds support for parsing CWL input files with autogenerated
Schema SALAD parsers, in order to obtain a coherent representation of
CWL object between processfile and jobfile.

Author: GlassOfWhiskey

MANIFEST.in

@@ -10,7 +10,9 @@ include cwl_utils/cwlNodeEngineJSConsole.js
 include cwl_utils/cwlNodeEngineWithContext.js
 include testdata/*.cwl
 include testdata/*.yaml
+include testdata/*.yml
 include testdata/*.input
+include testdata/*.json
 include testdata/*.ttl
 include testdata/*.owl
 include testdata/*.js

create_cwl_from_objects.py

@@ -9,11 +9,11 @@
 
 def main() -> None:
     """Generate a CWL object to match "cat-tool.cwl"."""
-    inputs = [cwl.CommandInputParameter(id="file1", type="File")]
+    inputs = [cwl.CommandInputParameter(id="file1", type_="File")]
     outputs = [
         cwl.CommandOutputParameter(
             id="output",
-            type="File",
+            type_="File",
             outputBinding=cwl.CommandOutputBinding(glob="output"),
         )
     ]