Install hatchling to build cwl-utils

Author: GlassOfWhiskey

.github/workflows/ci-tests.yml

@@ -72,7 +72,7 @@ jobs:
 
       - name: Upgrade setuptools and install tox
         run: |
-          pip install -U pip setuptools wheel
+          pip install -U pip setuptools wheel hatchling
           pip install tox tox-gh-actions
 
       - name: MyPy cache
@@ -119,7 +119,7 @@ jobs:
 
       - name: Upgrade setuptools and install tox
         run: |
-          pip install -U pip setuptools wheel
+          pip install -U pip setuptools wheel hatchling
           pip install tox tox-gh-actions
 
       - if: ${{ matrix.step == 'pydocstyle' && github.event_name == 'pull_request'}}
@@ -262,7 +262,7 @@ jobs:
 
       - name: Install packages
         run: |
-          pip install -U pip setuptools wheel
+          pip install -U pip setuptools wheel hatchling
           pip install virtualenv
 
       - name: Release test
@@ -302,7 +302,7 @@ jobs:
             tox.ini
       - name: Upgrade setuptools and install tox
         run: |
-          pip install -U pip setuptools wheel
+          pip install -U pip setuptools wheel hatchling
           pip install tox tox-gh-actions
       # # docker for mac install is not currently stable
       # - name: 'SETUP MacOS: load Homebrew cache'

Makefile

@@ -89,18 +89,18 @@ clean: FORCE
 
 # Linting and code style related targets
 ## sort_import            : sorting imports using isort: https://github.com/timothycrosley/isort
-sort_imports: $(PYSOURCES) mypy-stubs
+sort_imports: $(filter-out cwltool/fast_parser.py,$(PYSOURCES)) mypy-stubs
 	isort $^
 
-remove_unused_imports: $(PYSOURCES)
+remove_unused_imports: $(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	autoflake --in-place --remove-all-unused-imports $^
 
 pep257: pydocstyle
 ## pydocstyle             : check Python docstring style
-pydocstyle: $(PYSOURCES)
+pydocstyle:$(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	pydocstyle --add-ignore=D100,D101,D102,D103 $^ || true
 
-pydocstyle_report.txt: $(PYSOURCES)
+pydocstyle_report.txt: $(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	pydocstyle setup.py $^ > $@ 2>&1 || true
 
 ## diff_pydocstyle_report : check Python docstring style for changed files only
@@ -118,10 +118,10 @@ codespell-fix:
 
 ## format                 : check/fix all code indentation and formatting (runs black)
 format:
-	black --exclude cwltool/schemas setup.py cwltool.py cwltool tests mypy-stubs
+	black --exclude cwltool/fast_parser.py cwltool/schemas setup.py cwltool.py cwltool tests mypy-stubs
 
 format-check:
-	black --diff --check --exclude cwltool/schemas setup.py cwltool.py cwltool tests mypy-stubs
+	black --diff --check --exclude cwltool/fast_parser.py cwltool/schemas setup.py cwltool.py cwltool tests mypy-stubs
 
 ## pylint                 : run static code analysis on Python code
 pylint: $(PYSOURCES)
@@ -159,11 +159,11 @@ diff-cover.html: coverage.xml
 	diff-cover --compare-branch=main $^ --html-report $@
 
 ## test                   : run the cwltool test suite
-test: $(PYSOURCES)
+test: $(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	python3 -m pytest ${PYTEST_EXTRA}
 
 ## testcov                : run the cwltool test suite and collect coverage
-testcov: $(PYSOURCES)
+testcov: $(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	python3 -m pytest --cov --cov-config=.coveragerc --cov-report= ${PYTEST_EXTRA}
 
 sloccount.sc: $(PYSOURCES) Makefile
@@ -178,18 +178,18 @@ list-author-emails:
 	@git log --format='%aN,%aE' | sort -u | grep -v 'root'
 
 mypy3: mypy
-mypy: $(PYSOURCES)
+mypy: $(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	MYPYPATH=$$MYPYPATH:mypy-stubs mypy $^
 
-mypyc: $(PYSOURCES)
+mypyc: $(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	MYPYPATH=mypy-stubs CWLTOOL_USE_MYPYC=1 pip install --verbose -e . \
 		 && pytest -vv ${PYTEST_EXTRA}
 
 shellcheck: FORCE
 	shellcheck build-cwltool-docker.sh cwl-docker.sh release-test.sh conformance-test.sh \
 		cwltool-in-docker.sh
 
-pyupgrade: $(PYSOURCES)
+pyupgrade: $(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	pyupgrade --exit-zero-even-if-changed --py310-plus $^
 	auto-walrus $^
 
@@ -217,7 +217,7 @@ release:
 		twine upload testenv2/src/${MODULE}/dist/* && \
 		git tag ${VERSION} && git push --tags
 
-flake8: $(PYSOURCES)
+flake8: $(filter-out cwltool/fast_parser.py,$(PYSOURCES))
 	flake8 $^
 
 FORCE:

cwltool/fast_parser.py

@@ -3849,7 +3849,7 @@ def save(
    stdout: random_stdout_filenameABCDEFG
 
 
-If the ``CommandLineTool`` contains logically chained commands (e.g. ``echo a && echo b``) ``stdout`` must include the output of every command.
+If the ``CommandLineTool`` contains logically chained commands (e.g. ``echo a && echo b``) ``stdout`` must include the output of every command.
 """
 stderrLoader: Final = _EnumLoader(("stderr",), "stderr")
 """