Switch deployment to GitHub Pages under comp-physics org

Author: sbryngelson

.DS_Store

@@ -0,0 +1,41 @@
+name: Deploy docs
+
+on:
+  push:
+    branches:
+      - master
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Build docs
+        run: |
+          pip install zensical
+          zensical build
+
+      - uses: actions/upload-pages-artifact@v3
+        with:
+          path: site/
+
+  deploy:
+    needs: build
+    runs-on: ubuntu-latest
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    steps:
+      - id: deployment
+        uses: actions/deploy-pages@v4

.github/workflows/deploy.yml

@@ -2,7 +2,7 @@
 
 **Companion documents: [Formatting your work](formatting.md)**
 
-See [here](https://github.com/sbryngelson/group-docs/tree/master/templates/paper/figures) for examples.
+See [here](https://github.com/comp-physics/group-docs/tree/master/templates/paper/figures) for examples.
 
 ## This seems like a lot of work. Why am I doing this?
 
@@ -22,7 +22,7 @@ These are TeX packages that provide a natural way to achieve consistency.
 There is a steep learning curve, though the trade-off is worth it compared to their competitors.
 The TeX stack exchange website regularly answers questions about these packages.
 A web search of almost any basic TikZ/PGF question will quickly flag an answer.
-I can provide example `.tex` files for many things (like [here](https://github.com/sbryngelson/group-docs/tree/master/templates/paper/figures)), and you can gather examples from your colleagues as well as online (like [here](https://github.com/comp-physics/tikz-examples) and [here](https://github.com/comp-physics/TikZ-examples-2)).
+I can provide example `.tex` files for many things (like [here](https://github.com/comp-physics/group-docs/tree/master/templates/paper/figures)), and you can gather examples from your colleagues as well as online (like [here](https://github.com/comp-physics/tikz-examples) and [here](https://github.com/comp-physics/TikZ-examples-2)).
 
 Some other nice features:
 
@@ -33,7 +33,7 @@ Some other nice features:
 
 Compile all your figures as standalone PDF documents.
 This is handy for your paper and for using them in presentations and other media.
-With TikZ, this is quite easy, [here](https://github.com/sbryngelson/group-docs/blob/master/templates/paper/figures/slices.tex) is an example.
+With TikZ, this is quite easy, [here](https://github.com/comp-physics/group-docs/blob/master/templates/paper/figures/slices.tex) is an example.
 Here is a template of sorts:
 ```tex
 \input{tikz_preamble}
@@ -47,7 +47,7 @@ Here is a template of sorts:
 
 \end{document}
 ```
-where I have a separate file called `tikz_preamble.tex` that you can find [here](https://github.com/sbryngelson/group-docs/blob/master/templates/paper/figures/tikz_preamble.tex) that holds the relevant packages I need and defined the document style.
+where I have a separate file called `tikz_preamble.tex` that you can find [here](https://github.com/comp-physics/group-docs/blob/master/templates/paper/figures/tikz_preamble.tex) that holds the relevant packages I need and defined the document style.
 
 Use Tikz option:
 
@@ -91,7 +91,7 @@ Place your sub-figure labels (e.g., (a) and (b)) in a place that is not too obtr
 * If you need sub-captions, you should put the sub-figure labels below the center of the figure.
 
 Do not put the sub-figure captions directly below the sub-figures if you have no "real" caption (e.g., you are just labeling them (a) or (b), etc.); in this case, instead put them in one of the corners per above.
-See the examples [here](https://github.com/sbryngelson/group-docs/tree/master/templates/paper/figures) for reference.
+See the examples [here](https://github.com/comp-physics/group-docs/tree/master/templates/paper/figures) for reference.
 
 Place a space between your sub-figure labels (e.g., (a, b) instead of (a,b)).
 

.readthedocs.yaml

@@ -33,10 +33,10 @@ You can connect them by placing `\input{preamble.tex}` at the top of your main t
 clause.
 
 In the preamble file, you should include some packages.
-[Here](https://github.com/sbryngelson/group-docs/blob/master/templates/paper/preamble.tex) are some examples.
+[Here](https://github.com/comp-physics/group-docs/blob/master/templates/paper/preamble.tex) are some examples.
 Please look them up to see what they do.
 
-For `elsarticle` class files (mine is included [here](https://github.com/sbryngelson/group-docs/blob/master/templates/paper/elsarticle.cls)), which I recommend you use, you need to organize the hyper-reference coloring a bit differently, which in that example document you will see in the preamble as well the top of `main.tex`
+For `elsarticle` class files (mine is included [here](https://github.com/comp-physics/group-docs/blob/master/templates/paper/elsarticle.cls)), which I recommend you use, you need to organize the hyper-reference coloring a bit differently, which in that example document you will see in the preamble as well the top of `main.tex`
 
 ```tex
 \documentclass[11pt,sort&compress]{elsarticle}
@@ -79,7 +79,7 @@ I usually put all of these in a single file that is invoked in the LaTeX preambl
 ```tex
 \input{mathsymbols.tex}
 ```
-and an example such file is in [`templates/paper/mathsymbols.tex`](https://github.com/sbryngelson/group-docs/blob/master/templates/paper/mathsymbols.tex) in this repository.
+and an example such file is in [`templates/paper/mathsymbols.tex`](https://github.com/comp-physics/group-docs/blob/master/templates/paper/mathsymbols.tex) in this repository.
 
 Some notation rules you should follow
 
@@ -150,7 +150,7 @@ Some examples and common errors:
 ## Referencing your bibliography
 
 Use `natbib` via `\usepackage{natbib}` (it is automatically loaded when one uses the `elsarticle` class).
-I recommend the bibliography style file in the template at [`templates/paper/bibsty.bst`](https://github.com/sbryngelson/group-docs/blob/master/templates/paper/bibsty.bst).
+I recommend the bibliography style file in the template at [`templates/paper/bibsty.bst`](https://github.com/comp-physics/group-docs/blob/master/templates/paper/bibsty.bst).
 This is automatically handled if you use the paper template in this repository.
 This way, you will have access to text and parenthetical citations, which render as:
 > One can partially address this problem by working in Fourier space [1] or fitting a parametric model to approximate the eddy diffusivity operator [21, 23]. However, the former requires spatial homogeneity, and the latter's accuracy depends on the parametric model's quality. Liu et al. [17] introduces an improved model that uses the nonlocal eddy diffusivity operator's moments to approximate the operator.
@@ -188,7 +188,7 @@ We generally want our references at the end of sentences unless they are part of
 * Use `bibtool` to remove unused entries from your bibliography (`.bib`) file
     * Remove all unused bibliography entries from your `.bib` file. To do this,
         * Make sure you have `bibtool` installed your your system
-        * Copy a `bibtool.config` file to your document path, mine is located [here](https://github.com/sbryngelson/group-docs/blob/master/templates/paper/bibtool.config)
+        * Copy a `bibtool.config` file to your document path, mine is located [here](https://github.com/comp-physics/group-docs/blob/master/templates/paper/bibtool.config)
         * Compile your document (I prefer `latexmk` for this, but a combination of `pdflatex` and `bibtex` also works).
         * Use the command `bibtool -r bibtool.config -x main.aux > test.bib`
         * Now you have a file `test.bib` that contains only the bibliography entries in your document
@@ -200,7 +200,7 @@ We generally want our references at the end of sentences unless they are part of
     * It does this on `test.bib` in the above call. You will want to do it on whatever the `bibtool` output file is.
 
 * Bibliography style file (`.bst`)
-    * Unless the journal or conference you submit to insists otherwise, use the style file [here](https://github.com/sbryngelson/group-docs/blob/master/templates/paper/bibsty.bst). This style file includes the relevant information you want your entries to include (like title), but ignores others (like month of publication). It also supports author-year citations (invoked via `\citet{}` as above).
+    * Unless the journal or conference you submit to insists otherwise, use the style file [here](https://github.com/comp-physics/group-docs/blob/master/templates/paper/bibsty.bst). This style file includes the relevant information you want your entries to include (like title), but ignores others (like month of publication). It also supports author-year citations (invoked via `\citet{}` as above).
 
 ## Colors
 

docs/group-syllabus/figures.md

@@ -50,7 +50,7 @@ When you create a response document, make sure to
 
 There are examples in this repository, including
 
-* A Revision template [in this directory](https://github.com/sbryngelson/group-docs/tree/master/templates/paper_rebuttal)
+* A Revision template [in this directory](https://github.com/comp-physics/group-docs/tree/master/templates/paper_rebuttal)
 
 * In the same place, a `Makefile` that uses the `latexdiff` tool to create a `diff` between the submitted (`main.tex`) and revised (`main_rev.tex`) manuscript files in the form of a new PDF file called `diff.pdf`. This shows the reviewer explicitly all the changes you made to improve the paper (on top of the revisions in the response to the reviewers document).
 

docs/group-syllabus/formatting.md

@@ -27,10 +27,10 @@ Welcome! This is the documentation for the Computational Physics research group
 [Hardware](group-syllabus/hardware.md)
 
 **Templates** —
-[Papers](https://github.com/sbryngelson/group-docs/tree/master/templates/paper) ·
-[Paper reviews](https://github.com/sbryngelson/group-docs/tree/master/templates/paper_rebuttal) ·
-[Figures](https://github.com/sbryngelson/group-docs/tree/master/templates/paper/figures) ·
-[Talks](https://github.com/sbryngelson/group-docs/tree/master/templates/talks)
+[Papers](https://github.com/comp-physics/group-docs/tree/master/templates/paper) ·
+[Paper reviews](https://github.com/comp-physics/group-docs/tree/master/templates/paper_rebuttal) ·
+[Figures](https://github.com/comp-physics/group-docs/tree/master/templates/paper/figures) ·
+[Talks](https://github.com/comp-physics/group-docs/tree/master/templates/talks)
 
 ---
 

docs/group-syllabus/responding-to-reviewers.md

@@ -1,6 +1,6 @@
 site_name: "Computational Physics @ GT: Group Documentation"
-site_url: https://group-docs.readthedocs.io
-repo_url: https://github.com/sbryngelson/group-docs
+site_url: https://comp-physics.group/group-docs/
+repo_url: https://github.com/comp-physics/group-docs
 edit_uri: edit/master/docs/
 docs_dir: docs
 

docs/index.md

@@ -2,7 +2,7 @@
 
 Documentation for the Computational Physics research group at Georgia Tech.
 
-**[Read the docs here](https://github.com/sbryngelson/group-docs)**
+**[Read the docs here](https://comp-physics.group/group-docs/)**
 
 ## License