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Updates for PyPI build
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‎.github/workflows/wheels.yml‎

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release:
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types: [published]
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permissions:
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contents: read
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jobs:
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wheels:
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name: ${{ matrix.os }}
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build_wheels:
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name: wheels-${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-latest, macos-13, macos-14, windows-latest]
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os: [ubuntu-latest, macos-latest, windows-latest]
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steps:
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- uses: actions/checkout@v4
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- uses: pypa/cibuildwheel@v2.18
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- name: Build wheels
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uses: pypa/cibuildwheel@v3.4.1
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env:
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CIBW_BUILD: "cp310-* cp311-* cp312-*"
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CIBW_TEST_REQUIRES: pytest
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CIBW_TEST_COMMAND: "python -c \"import bioimage_cpp\" && pytest {project}/tests"
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CIBW_BUILD: "cp310-* cp311-* cp312-* cp313-* cp314-*"
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CIBW_SKIP: "*-win32 *-manylinux_i686 *-musllinux_*"
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CIBW_ARCHS_MACOS: "native"
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CIBW_TEST_REQUIRES: "pytest pooch scipy"
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CIBW_TEST_COMMAND: "python -c \"import bioimage_cpp; print(bioimage_cpp.__file__)\" && pytest -q {project}/tests"
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- name: Upload wheels
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uses: actions/upload-artifact@v4
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with:
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name: cibw-wheels-${{ matrix.os }}
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path: wheelhouse/*.whl
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build_sdist:
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name: sdist
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Install build tooling
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run: python -m pip install build twine
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- name: Build sdist
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run: python -m build --sdist
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- name: Check sdist metadata
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run: python -m twine check dist/*
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- name: Upload sdist
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uses: actions/upload-artifact@v4
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with:
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name: cibw-sdist
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path: dist/*.tar.gz
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publish-testpypi:
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name: publish-to-testpypi
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needs: [build_wheels, build_sdist]
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runs-on: ubuntu-latest
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if: github.event_name == 'workflow_dispatch'
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environment:
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name: testpypi
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url: https://test.pypi.org/p/bioimage-cpp
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permissions:
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id-token: write
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steps:
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- name: Download distributions
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uses: actions/download-artifact@v4
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with:
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pattern: cibw-*
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path: dist
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merge-multiple: true
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- name: List distributions
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run: ls -lh dist
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- name: Publish to TestPyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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repository-url: https://test.pypi.org/legacy/
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publish-pypi:
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name: publish-to-pypi
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needs: [build_wheels, build_sdist]
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runs-on: ubuntu-latest
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if: github.event_name == 'release' && github.event.action == 'published'
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environment:
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name: pypi
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url: https://pypi.org/p/bioimage-cpp
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permissions:
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id-token: write
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steps:
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- name: Download distributions
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uses: actions/download-artifact@v4
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with:
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pattern: cibw-*
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path: dist
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merge-multiple: true
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- name: List distributions
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run: ls -lh dist
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- name: Publish to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1

‎.gitignore‎

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*.npz
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CLAUDE.md
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pypi-release.txt

‎LICENSE‎

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MIT License
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Copyright (c) 2026 bioimage-cpp contributors
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.

‎pyproject.toml‎

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classifiers = [
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"Development Status :: 3 - Alpha",
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"Intended Audience :: Science/Research",
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"License :: OSI Approved :: MIT License",
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"Programming Language :: C++",
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"Programming Language :: C++ :: 20",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3 :: Only",
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"Programming Language :: Python :: 3.10",
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"Programming Language :: Python :: 3.11",
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"Programming Language :: Python :: 3.12",
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"Programming Language :: Python :: 3.13",
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"Programming Language :: Python :: 3.14",
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"Topic :: Scientific/Engineering :: Image Processing",
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]
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[project.urls]
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Homepage = "https://github.com/computational-cell-analytics/bioimage-cpp"
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Repository = "https://github.com/computational-cell-analytics/bioimage-cpp"
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Issues = "https://github.com/computational-cell-analytics/bioimage-cpp/issues"
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[project.optional-dependencies]
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test = ["pytest", "pooch", "scipy"]
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data = ["pooch"]
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cmake.version = ">=3.21"
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cmake.build-type = "Release"
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wheel.packages = ["src/bioimage_cpp"]
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sdist.exclude = [
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"pypi-release.txt",
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"dist/",
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"wheelhouse/",
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"_skbuild/",
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"build/",
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"*.egg-info/",
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".pytest_cache/",
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"__pycache__/",
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]
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[tool.pytest.ini_options]
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testpaths = ["tests"]

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