We are working to make neuroscience a better science: more efficient, open, reproducible, friendly, tranparent, exciting, ...
Only some of the projects we lead or participate in are contained in this organization but in individual projects organization or repositories under other initiatives.
People of the center: @yarikoptic, @asmacdo, @candleindark, @vmdocua, @codycbakerphd.
Emeritus: @jgors, @glalteva, @oliver-contier, @snastase, @mvdoc, @kyleam, @chrispycheng, @TheChymera, @jwodder.
Collaborators and contributors: many wonderful people, find some also among our Teams at https://github.com/orgs/con/teams .
If you have any recommendations or suggestions, feel welcome to file an issue among issues of this organizational repository. This organization contains some repositories which are projects in conceptualization stages. Some are also listed in the issues of the con/ceptualization repository.
Shortcuts to the repositories of most interest
| Name | Description | Issues | PRs | Stars | Forks |
|---|---|---|---|---|---|
| 2025-sfn-standards | Poster covering standards in neuroscience presented at SfN 2025 | 0 | 0 | 0 | 0 |
| annextube | YouTube archive system using git-annex for efficient storage and incremental updates. | 2 | 0 | 2 | 0 |
| annextube-action | 0 | 0 | 0 | 0 | |
| annextubetesting | Repository with backup of @AnnexTubeTesting channel | 0 | 0 | 0 | 0 |
| con/boarding | Onboarding documents | ||||
| con/catenate | All the resources and conText a new conScript needs, smushed together into a single doc. | 3 | 0 | 2 | 4 |
| centerforopenneuroscience.org | Website materials | 9 | 0 | 4 | 25 |
| con/ceptualization | Ideas for the projects | 1 | 0 | 1 | 0 |
| con/cierge | Temporal itemization for the CON roadmap. | 19 | 0 | 1 | 0 |
| citations-collector | Discover and curate scholarly citations of articles, datasets and software. | 3 | 0 | 2 | 0 |
| communitator | RFC/idea: A Python module to assist contacting project's community | 2 | 0 | 1 | 0 |
| con-intro | intro content for CON | 0 | 0 | 0 | 1 |
| con/veyor | 0 | 0 | 0 | 0 | |
| demos | Various demos (ATM of con/duct) of tools in asciineema etc | 0 | 0 | 0 | 1 |
| docflow | helper to collab on google docs etc | 1 | 0 | 0 | 0 |
| con/duct | A helper to run a command, capture stdout/stderr and details about running | 60 | 11 | 11 | 6 |
| con/duct-gallery | 1 | 1 | 0 | 1 | |
| dump-research-info | A repo that gathers research information related to Center for Open Neuroscience with a tool to dump the gathered info to an instance of dump-things-server | 5 | 0 | 0 | 0 |
| external-services | A simple registry of external services to use for YOUR hosted files | 2 | 0 | 0 | 0 |
| con/ference | (Idea stage) Open-source platform for virtual&hybrid conferencing | 18 | 0 | 13 | 0 |
| con/flux | The utility to draw a map of git/git-annex clones of a repository | 1 | 0 | 0 | 0 |
| fscacher | Caching results of operations on heavy file trees | 20 | 6 | 2 | 2 |
| git-annex | A non-official testing bed and distribution of git-annex established for CON & DataLad purposes. Official git-annex repository: https://git.kitenet.net/index.cgi/git-annex.git/ | 22 | 6 | 28 | 5 |
| git-annex-ci-client-jobs | Not for humans, but for good CI setups to test git-annex | 0 | 3 | 0 | 0 |
| git-annex-ci-reports | 0 | 0 | 1 | 0 | |
| git-annex-log-stats | Crude scripts to produce historic plots for git / git-annex repos stats | 0 | 0 | 0 | 0 |
| con/job | A positive "con job" | 1 | 0 | 1 | 0 |
| journals | Registry of journals for Open Neuroscience (WiP: for now mostly dump from https://www.gbif.org/data-papers) | 4 | 0 | 0 | 1 |
| jsdownloader | RFC/idea: a JS library to provide browser client side download from a list of "path": [candidate URLs] | 2 | 0 | 0 | 0 |
| liab-deployments | Fork from https://hub.psychoinformatics.de/lab-in-a-box/liab-deployments | 1 | 1 | 0 | 0 |
| mind_2018 | 0 | 0 | 0 | 0 | |
| con/noisseur | System for automated verification of entered/displayed information (on another computer) | 5 | 1 | 0 | 1 |
| nwb2bids | Reorganize NWB files into a BIDS directory layout. | 37 | 2 | 5 | 6 |
| open-brain-consent | Making neuroimaging open from the grounds (consent form) and up (tools) | 36 | 2 | 45 | 37 |
| opfvta-reexecution | Container-based Replication of https://doi.org/10.1038/s41398-022-01812-5 | 0 | 0 | 1 | 1 |
| con/quest | Meta-repository to discuss higher level aspects of search'ing for neural data | 1 | 0 | 0 | 0 |
| scripts | Various scripts for maintenance and administration of various things at CON and around | 0 | 0 | 0 | 0 |
| con/serve | 0 | 0 | 0 | 0 | |
| con/serve-liab | liab setup for conserve (explorations ATM of various potential setups) | 0 | 0 | 0 | 0 |
| serve-wayback-archive-demo | Demo on my attempt to use wayback-archive | 0 | 0 | 0 | 0 |
| shell-chronicle | Persistent, infinite history of shell commands | 0 | 0 | 3 | 1 |
| shub | GitHub mirror of http://datasets.datalad.org/?dir=/shub providing historical copy of containers from https://singularity-hub.org | 2 | 0 | 1 | 0 |
| skills | Anthropics claude-code skills for the CON masses | 0 | 0 | 2 | 2 |
| con/solidation | Produce activities reports from GitHub | 7 | 3 | 0 | 0 |
| sparkle-tools | 1 | 0 | 1 | 2 | |
| talks | GitHub Mirror of the https://datasets.datalad.org/?dir=/centerforopenneuroscience/talks where you can actually see them rendered | 2 | 2 | 0 | 2 |
| taxonomy-site-sandbox | 0 | 0 | 0 | 0 | |
| con/tents | Table of contents for the CON organization. | 0 | 0 | 1 | 0 |
| con/tinuous | Download build logs and artifacts from GitHub Actions, Travis, and Appveyor | 26 | 6 | 10 | 4 |
| con/tinuous-inception | CI logs for con/tinuous | 0 | 3 | 0 | 0 |
| con/tinuous-template | Copier template for tinuous | 0 | 0 | 0 | 0 |
| con/tinuum | Resources (later might be a tool) to create reproducible computational environments | 7 | 0 | 0 | 0 |
| con/tributors | Pay tribute to your contributors! A tool to automatically update contributor files. | 18 | 1 | 14 | 5 |
| tube | some default | 0 | 0 | 0 | 1 |
| upptime | Uptime of various CON project websites/services | 0 | 0 | 0 | 0 |
| utils | Collection of utils from CON folks. Mostly quick&dirty helpers | 2 | 0 | 1 | 1 |
| validation | Platform to discuss/distill coordination for validators output(s) | 3 | 3 | 1 | 1 |
| vandermeerlab-to-bids | Conversion tools for ingesting data from the van der Meer group at Dartmouth College and outputting it into BEP-32 compliant datasets for upload to the DANDI Archive. | 2 | 0 | 1 | 0 |
| con/versations | 1 | 0 | 0 | 1 | |
| visidata-demos | Various demos/explorations of data using visidata | 0 | 0 | 0 | 0 |
| work-history-data | A raw API dump of GitHub activity for select CON members. | 0 | 1 | 1 | 0 |
| yolo | Use podman to safely run claude-code with permission bypass (YOLO mode) | 14 | 1 | 13 | 5 |
