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Linux MaxQuant 2.8.0: spawned search task crashes due to double-space argument parsing issue

MaxQuant

Status: Open.

#217 In cox-labs/CoxLab_Bug_Reporting;

· LamarSummor opened on Jun 3, 2026

error creating a sdrf file

MaxQuant

Status: Open.

#216 In cox-labs/CoxLab_Bug_Reporting;

· KUProteomics opened on May 29, 2026

MaxQuant 2.6.7.0 and 2.7.5.0 are completely unusable for TMT data aquired on an Astral

MaxQuant

Status: Open.

#214 In cox-labs/CoxLab_Bug_Reporting;

· seanh-funcphos opened on May 5, 2026

MaxQuant v2.8.0.0 crashes on Start with KeyNotFoundException in Sdrf.WriteSdrfImpl — Orbitrap Astral, Reporter MS2

MaxQuant

Status: Open.

#213 In cox-labs/CoxLab_Bug_Reporting;

· seanh-funcphos opened on May 5, 2026

Mitochondrial Complex II Ontology is Outdated

Perseus

Status: Open.

#211 In cox-labs/CoxLab_Bug_Reporting;

· DarioS opened on Apr 17, 2026

Single Sample Pathway Analysis

Perseus Feature Request

Status: Open.

#210 In cox-labs/CoxLab_Bug_Reporting;

· DarioS opened on Apr 2, 2026

MaxQuant_2.7.5.0 could not find file "…/andromeda/aplfiles” during MSMS_first_search

MaxQuant

Status: Open.

#209 In cox-labs/CoxLab_Bug_Reporting;

· sknodel779 opened on Apr 1, 2026

Two-sample Tests Documentation is Vague

Perseus

Status: Open.

#207 In cox-labs/CoxLab_Bug_Reporting;

· DarioS opened on Mar 22, 2026

Generic Matrix export decimal separator bug

Perseus

Status: Open.

#206 In cox-labs/CoxLab_Bug_Reporting;

· Ferienkrebs opened on Mar 18, 2026

Load local modifications from custom dir

MQ Feature Request

Status: Open.

#205 In cox-labs/CoxLab_Bug_Reporting;

· bernt-matthias opened on Mar 18, 2026

ProForma 2 support in MaxQuant output

MQ Feature Request

Status: Open.

#204 In cox-labs/CoxLab_Bug_Reporting;

· mobiusklein opened on Mar 11, 2026

Perseus Feature Request

Perseus Feature Request

Status: Open.

#203 In cox-labs/CoxLab_Bug_Reporting;

· edumacmelo opened on Mar 9, 2026