Explain the feature in detail
Dear MQ developers. I'm working on the Galaxy tool for MQ and wonder how to support custom modifications.
The problem is that we use containers in Galaxy, i.e. we can not write into the installation directory. Also https://groups.google.com/g/maxquant-list/c/RU7pCLX8EiY/m/WGkrsgGrBgAJ won't work for Galaxy since we can not mount different files per job.
The only solution seems to be to copy the whole installation directory of maxquant into the job's working dir and place modifications.local.xml there.
Wondering if it would be possible to support reading the file from other places, e.g. the current working dir or specifying the location via another command line parameter?
Explain the feature in detail
Dear MQ developers. I'm working on the Galaxy tool for MQ and wonder how to support custom modifications.
The problem is that we use containers in Galaxy, i.e. we can not write into the installation directory. Also https://groups.google.com/g/maxquant-list/c/RU7pCLX8EiY/m/WGkrsgGrBgAJ won't work for Galaxy since we can not mount different files per job.
The only solution seems to be to copy the whole installation directory of maxquant into the job's working dir and place modifications.local.xml there.
Wondering if it would be possible to support reading the file from other places, e.g. the current working dir or specifying the location via another command line parameter?