bidspm/src/defaults/defaultResultsStructure.m at 6ecc760bf4e329ca465a411fbe5e5757c49ba3a5 · cpp-lln-lab/bidspm · GitHub

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function result  = defaultResultsStructure()
  %

  % (C) Copyright 2019 bidspm developers

  result = defaultContrastsStructure;

  result.png = true();

  result.csv = true();
  result.atlas = 'Neuromorphometrics';

  result.threshSpm = false();

  result.binary = false();

  result.montage = struct('do', false(), ...
                          'slices', [], ...
                          'orientation', 'axial', ...
                          'background',  fullfile(spm('dir'), ...
                                                  'canonical', ...
                                                  'avg152T1.nii'));

  result.nidm = true();

  % transparent plot
  layers{1} = struct('color', struct('file', result.montage.background, ...
                                     'range', [0 1], ...
                                     'map', gray(256)));

  %   color_map_folder = fullfile(fileparts(which('map_luminance')), '..', 'mat_maps');
  %   load(fullfile(color_map_folder, 'diverging_bwr_iso.mat'));

  layers{2} = struct('color', struct('file', [], ... % con image
                                     'range', [-4 4], ...
                                     'label', ''), ...
                     'opacity', struct('file', [], ... % assume spmT image
                                       'range', [2 3], ...
                                       'label', ''), ...
                     'type', 'dual');

  layers{3} = struct('color', struct('file', [], ... % spmT mask thresholded at 0.05 FWD
                                     'map', 'w', ...
                                     'line_width', 1));

  result.sdConfig.layers = layers;

  settings = sd_config_settings('init');

  settings.slice.orientation = result.montage.orientation;
  settings.slice.disp_slices = -50:10:50;
  settings.fig_specs.n.slice_column = 4;
  settings.fig_specs.title = [];

  result.sdConfig.settings = settings;

end