[CI] Compile Uno with SPRAL

amontoison · amontoison · commit 4c712ce05b38 · 2026-04-15T15:33:09.000-06:00
diff --git a/.github/C/CMakeLists.txt b/.github/C/CMakeLists.txt
@@ -19,11 +19,14 @@ if (CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
    SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wmaybe-uninitialized")
 endif()
 
-find_library(UNO REQUIRED)
-add_executable(tests_hs015 tests_hs015.c)
+# external dependencies
+set(LIBRARIES "")
+# additional libraries to link against
+set(AUXILIARY_LIBRARIES "" CACHE STRING "Additional libraries to link against")
 
-# link the math library and Uno
-target_link_libraries(tests_hs015 PUBLIC m ${UNO})
+# Uno
+find_library(UNO REQUIRED)
+list(APPEND LIBRARIES m ${UNO}) # math library and Uno
 
 # LAPACK
 # convert relative paths of LAPACK to absolute paths
@@ -33,10 +36,10 @@ if(LAPACK_LIBRARIES)
       get_filename_component(absolute_path "${relative_path}" ABSOLUTE)
       list(APPEND ABSOLUTE_LAPACK_LIBRARIES "${absolute_path}")
    endforeach()
-   target_link_libraries(tests_hs015 PRIVATE ${ABSOLUTE_LAPACK_LIBRARIES})
+   list(APPEND LIBRARIES ${ABSOLUTE_LAPACK_LIBRARIES})
 else()
    find_package(LAPACK REQUIRED)
-   target_link_libraries(tests_hs015 PRIVATE LAPACK::LAPACK)
+   list(APPEND LIBRARIES LAPACK::LAPACK)
 endif()
 
 # BLAS
@@ -47,8 +50,22 @@ if(BLAS_LIBRARIES)
       get_filename_component(absolute_path "${relative_path}" ABSOLUTE)
       list(APPEND ABSOLUTE_BLAS_LIBRARIES "${absolute_path}")
    endforeach()
-   target_link_libraries(tests_hs015 PRIVATE ${ABSOLUTE_BLAS_LIBRARIES})
+   list(APPEND LIBRARIES ${ABSOLUTE_BLAS_LIBRARIES})
 else()
    find_package(BLAS REQUIRED)
-   target_link_libraries(tests_hs015 PRIVATE BLAS::BLAS)
+   list(APPEND LIBRARIES BLAS::BLAS)
 endif()
+
+# add the auxiliary libraries last
+if(AUXILIARY_LIBRARIES)
+   set(ABSOLUTE_AUXILIARY_LIBRARIES)
+   foreach(relative_path IN LISTS AUXILIARY_LIBRARIES)
+      get_filename_component(absolute_path "${relative_path}" ABSOLUTE)
+      list(APPEND ABSOLUTE_AUXILIARY_LIBRARIES "${absolute_path}")
+   endforeach()
+   list(APPEND LIBRARIES ${ABSOLUTE_AUXILIARY_LIBRARIES})
+endif()
+
+# tests
+add_executable(tests_hs015 tests_hs015.c)
+target_link_libraries(tests_hs015 PUBLIC ${LIBRARIES})
diff --git a/.github/workflows/C-test-example.yml b/.github/workflows/C-test-example.yml
@@ -42,15 +42,24 @@ jobs:
         shell: bash
         run: bash dependencies/scripts/download_dependencies.sh
 
+      - name: Set the environment variables for OpenMP
+        shell: bash
+        run: |
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
+
       - name: Configure Uno CMake
         shell: bash
         # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
         # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
         run: |
           cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} \
                                                -DBQPD=${{github.workspace}}/dependencies/lib/libbqpd.a \
+                                               -DHIGHS=${{github.workspace}}/dependencies/lib/libhighs.a \
+                                               -DSPRAL=${{github.workspace}}/dependencies/lib/libspral.a \
                                                -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
-                                               -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libblas.a;${{github.workspace}}/dependencies/lib/libcblas.a" \
+                                               -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libcblas.a;${{github.workspace}}/dependencies/lib/libblas.a" \
+                                               -DAUXILIARY_LIBRARIES="${{github.workspace}}/dependencies/lib/libhwloc.so" \
                                                -DBUILD_STATIC_LIBS=OFF \
                                                -DBUILD_SHARED_LIBS=ON .
 
@@ -70,12 +79,13 @@ jobs:
                 -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} \
                 -DUNO=/usr/local/lib/libuno.so \
                 -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
-                -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libblas.a;${{github.workspace}}/dependencies/lib/libcblas.a" .
+                -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libblas.a" \
+                -DAUXILIARY_LIBRARIES="${{github.workspace}}/dependencies/lib/libhwloc.so" .
 
       - name: Build example
         working-directory: ${{github.workspace}}/interfaces/C/example
         run: cmake --build ${{github.workspace}}/interfaces/C/example/build --config ${{env.BUILD_TYPE}}
 
       - name: Run example
         working-directory: ${{github.workspace}}/interfaces/C/example/build
-        run: ./example_hs015
+        run: ./example_hs015
diff --git a/.github/workflows/C-tests-linux.yml b/.github/workflows/C-tests-linux.yml
@@ -44,15 +44,24 @@ jobs:
         shell: bash
         run: bash dependencies/scripts/download_dependencies.sh
 
+      - name: Set the environment variables for OpenMP
+        shell: bash
+        run: |
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
+
       - name: Configure Uno CMake
         shell: bash
         # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
         # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
         run: |
           cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} \
                                                -DBQPD=${{github.workspace}}/dependencies/lib/libbqpd.a \
+                                               -DHIGHS=${{github.workspace}}/dependencies/lib/libhighs.a \
+                                               -DSPRAL=${{github.workspace}}/dependencies/lib/libspral.a \
                                                -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
                                                -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libblas.a;${{github.workspace}}/dependencies/lib/libcblas.a" \
+                                               -DAUXILIARY_LIBRARIES="${{github.workspace}}/dependencies/lib/libhwloc.so" \
                                                -DBUILD_STATIC_LIBS=OFF \
                                                -DBUILD_SHARED_LIBS=ON .
 
@@ -72,7 +81,8 @@ jobs:
                 -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} \
                 -DUNO=/usr/local/lib/libuno.so \
                 -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
-                -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libblas.a;${{github.workspace}}/dependencies/lib/libcblas.a" .
+                -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libblas.a" \
+                -DAUXILIARY_LIBRARIES="${{github.workspace}}/dependencies/lib/libhwloc.so".
 
       - name: Build example
         working-directory: ${{github.workspace}}/.github/C
diff --git a/.github/workflows/Fortran-tests-linux.yml b/.github/workflows/Fortran-tests-linux.yml
@@ -38,6 +38,12 @@ jobs:
         shell: bash
         run: bash dependencies/scripts/download_dependencies.sh
 
+      - name: Set the environment variables for OpenMP
+        shell: bash
+        run: |
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
+
       - name: Configure Uno CMake
         shell: bash
         run: |
@@ -50,8 +56,9 @@ jobs:
                                                -DMUMPS_PORD_LIBRARY=${{github.workspace}}/dependencies/lib/libpord.a \
                                                -DMUMPS_MPISEQ_LIBRARY=${{github.workspace}}/dependencies/lib/libmpiseq.a \
                                                -DHIGHS=${{github.workspace}}/dependencies/lib/libhighs.a \
+                                               -DSPRAL=${{github.workspace}}/dependencies/lib/libspral.a \
                                                -DMETIS_LIBRARY=${{github.workspace}}/dependencies/lib/libmetis.a \
-                                               -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libblas.a;${{github.workspace}}/dependencies/lib/libcblas.a" \
+                                               -DBLAS_LIBRARIES=${{github.workspace}}/dependencies/lib/libblas.a \
                                                -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
                                                -DBUILD_STATIC_LIBS=ON \
                                                -DBUILD_SHARED_LIBS=OFF .
@@ -61,7 +68,13 @@ jobs:
 
       - name: Compile Fortran tests
         working-directory: ${{github.workspace}}/interfaces/Fortran
-        run: gfortran example_uno.f90 -o example_uno -L../../build -luno -L${{github.workspace}}/dependencies/lib -lhighs -ldmumps -lmumps_common -lmpiseq -lpord -lmetis -lbqpd -llapack -lcblas -lblas -lstdc++
+        run: |
+          gfortran example_uno.f90 -o example_uno \
+                                   -L../../build -luno \
+                                   -L${{github.workspace}}/dependencies/lib \
+                                   -Wl,-rpath,${{github.workspace}}/dependencies/lib \
+                                   -lhighs -ldmumps -lmumps_common -lmpiseq -lpord -lmetis \
+                                   -lbqpd -lspral -lhwloc -llapack -lcblas -lblas -lgomp -lstdc++
 
       - name: Run Fortran tests
         working-directory: ${{github.workspace}}/interfaces/Fortran
diff --git a/.github/workflows/build-python-wheels.yml b/.github/workflows/build-python-wheels.yml
@@ -246,6 +246,12 @@ jobs:
       - name: Install unopy from TestPyPI
         run: pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ unopy
 
+      - name: Set the environment variables for OpenMP
+        shell: bash
+        run: |
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
+
       - name: Run example
         working-directory: ${{github.workspace}}/interfaces/Python/example
         run: python example_hs015.py
@@ -272,6 +278,12 @@ jobs:
       - name: Install unopy from PyPI
         run: pip install unopy
 
+      - name: Set the environment variables for OpenMP
+        shell: bash
+        run: |
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
+
       - name: Run example
         working-directory: ${{github.workspace}}/interfaces/Python/example
-        run: python example_hs015.py
+        run: python example_hs015.py
diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
@@ -183,6 +183,8 @@ jobs:
           -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libcblas.a;${{github.workspace}}/dependencies/lib/libblas.a" \
           -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
           -DHIGHS=${{github.workspace}}/dependencies/lib/libhighs.a \
+          -DSPRAL=${{github.workspace}}/dependencies/lib/libspral.a \
+          -DAUXILIARY_LIBRARIES="${{github.workspace}}/dependencies/lib/libhwloc.so" \
           -DBUILD_STATIC_LIBS=ON \
           -DBUILD_SHARED_LIBS=ON
 
@@ -212,6 +214,8 @@ jobs:
           -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libcblas.a;${{github.workspace}}/dependencies/lib/libblas.a" \
           -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
           -DHIGHS=${{github.workspace}}/dependencies/lib/libhighs.a \
+          -DSPRAL=${{github.workspace}}/dependencies/lib/libspral.a \
+          -DAUXILIARY_LIBRARIES="${{github.workspace}}/dependencies/lib/libhwloc.dylib" \
           -DBUILD_STATIC_LIBS=ON \
           -DBUILD_SHARED_LIBS=ON
 
@@ -234,7 +238,8 @@ jobs:
           -DBLAS_LIBRARIES="${{github.workspace}}\dependencies\lib\libcblas.a;${{github.workspace}}\dependencies\lib\libblas.a" ^
           -DLAPACK_LIBRARIES=${{github.workspace}}\dependencies\lib\liblapack.a ^
           -DHIGHS=${{github.workspace}}\dependencies\lib\libhighs.a ^
-          -DAUXILIARY_LIBRARIES=${{github.workspace}}\dependencies\lib\libstdc++.a ^
+          -DSPRAL=${{github.workspace}}\dependencies\lib\libspral.a ^
+          -DAUXILIARY_LIBRARIES="${{github.workspace}}\dependencies\lib\libhwloc.a;${{github.workspace}}\dependencies\lib\libstdc++.a" ^
           -DBUILD_STATIC_LIBS=ON ^
           -DBUILD_SHARED_LIBS=ON .
 
@@ -256,8 +261,9 @@ jobs:
           -DMUMPS_COMMON_LIBRARY=${{github.workspace}}\dependencies\lib\libmumps_common.a ^
           -DMUMPS_PORD_LIBRARY=${{github.workspace}}\dependencies\lib\libpord.a ^
           -DMUMPS_MPISEQ_LIBRARY=${{github.workspace}}\dependencies\lib\libmpiseq.a ^
-          -DBLAS_LIBRARIES="${{github.workspace}}\dependencies\lib\libcblas.lib;${{github.workspace}}\dependencies\lib\libblas.lib" ^
+          -DBLAS_LIBRARIES="${{github.workspace}}\dependencies\lib\libblas.lib" ^
           -DLAPACK_LIBRARIES=${{github.workspace}}\dependencies\lib\liblapack.lib ^
+          -DSPRAL=${{github.workspace}}\dependencies\lib\libspral.a ^
           -DBUILD_STATIC_LIBS=ON ^
           -DBUILD_SHARED_LIBS=OFF .
 
diff --git a/.github/workflows/julia-tests-ubuntu.yml b/.github/workflows/julia-tests-ubuntu.yml
@@ -43,9 +43,10 @@ jobs:
       - uses: julia-actions/cache@v2
 
       - name: Set the environment variables for OpenMP
+        shell: bash
         run: |
-          echo "OMP_CANCELLATION=TRUE" >> $GITHUB_ENV
-          echo "OMP_PROC_BIND=TRUE" >> $GITHUB_ENV
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
 
       - name: Set the environment variables for BinaryBuilder
         run: |
@@ -62,7 +63,7 @@ jobs:
       - name: Compile Uno_jll.jl
         run: |
           julia --color=yes -e 'using Pkg; Pkg.add("BinaryBuilder")'
-          julia --color=yes .github/julia/build_tarballs_yggdrasil.jl x86_64-linux-gnu-cxx11 --verbose --deploy="local"
+          julia --color=yes .github/julia/build_tarballs_yggdrasil.jl x86_64-linux-gnu-libgfortran5-cxx11 --verbose --deploy="local"
 
       # Now install a newer version of Julia to actually test Uno_jll.jl.
       # We choose v1.10 because it is the current Long-Term Support (LTS).
diff --git a/.github/workflows/julia-tests-unosolver.yml b/.github/workflows/julia-tests-unosolver.yml
@@ -41,9 +41,10 @@ jobs:
       - uses: julia-actions/cache@v2
 
       - name: Set the environment variables for OpenMP
+        shell: bash
         run: |
-          echo "OMP_CANCELLATION=TRUE" >> $GITHUB_ENV
-          echo "OMP_PROC_BIND=TRUE" >> $GITHUB_ENV
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
 
       - name: Set the environment variables for BinaryBuilder
         run: |
@@ -60,7 +61,7 @@ jobs:
       - name: Compile Uno_jll.jl
         run: |
           julia --color=yes -e 'using Pkg; Pkg.add("BinaryBuilder")'
-          julia --color=yes .github/julia/build_tarballs_yggdrasil.jl x86_64-linux-gnu-cxx11 --verbose --deploy="local"
+          julia --color=yes .github/julia/build_tarballs_yggdrasil.jl x86_64-linux-gnu-libgfortran5-cxx11 --verbose --deploy="local"
       # Now install a newer version of Julia to actually test Uno_jll.jl.
       # We choose v1.10 because it is the current Long-Term Support (LTS).
       - uses: julia-actions/setup-julia@v2
diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml
@@ -104,6 +104,13 @@ jobs:
             mingw-w64-x86_64-make
             mingw-w64-x86_64-metis
 
+      # ------------------- OpenMP -------------------
+      - name: Set the environment variables for OpenMP
+        shell: bash
+        run: |
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
+
       # =========================================================
       # DEPENDENCIES
       # =========================================================
@@ -132,6 +139,7 @@ jobs:
             -DMUMPS_COMMON_LIBRARY=${{github.workspace}}/dependencies/lib/libmumps_common.a \
             -DMUMPS_PORD_LIBRARY=${{github.workspace}}/dependencies/lib/libpord.a \
             -DMUMPS_MPISEQ_LIBRARY=${{github.workspace}}/dependencies/lib/libmpiseq.a \
+            -DSPRAL=${{github.workspace}}/dependencies/lib/libspral.a \
             -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libcblas.a;${{github.workspace}}/dependencies/lib/libblas.a" \
             -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
             -DHIGHS=${{github.workspace}}/dependencies/lib/libhighs.a \
@@ -162,6 +170,7 @@ jobs:
             -DMUMPS_COMMON_LIBRARY=${{github.workspace}}/dependencies/lib/libmumps_common.a \
             -DMUMPS_PORD_LIBRARY=${{github.workspace}}/dependencies/lib/libpord.a \
             -DMUMPS_MPISEQ_LIBRARY=${{github.workspace}}/dependencies/lib/libmpiseq.a \
+            -DSPRAL=${{github.workspace}}/dependencies/lib/libspral.a \
             -DBLAS_LIBRARIES="${{github.workspace}}/dependencies/lib/libcblas.a;${{github.workspace}}/dependencies/lib/libblas.a" \
             -DLAPACK_LIBRARIES=${{github.workspace}}/dependencies/lib/liblapack.a \
             -DHIGHS=${{github.workspace}}/dependencies/lib/libhighs.a \
@@ -187,6 +196,7 @@ jobs:
             -DMUMPS_COMMON_LIBRARY=${GITHUB_WORKSPACE}/dependencies/lib/libmumps_common.a \
             -DMUMPS_PORD_LIBRARY=${GITHUB_WORKSPACE}/dependencies/lib/libpord.a \
             -DMUMPS_MPISEQ_LIBRARY=${GITHUB_WORKSPACE}/dependencies/lib/libmpiseq.a \
+            -DSPRAL=${{github.workspace}}/dependencies/lib/libspral.a \
             -DBLAS_LIBRARIES="${GITHUB_WORKSPACE}/dependencies/lib/libcblas.a;${GITHUB_WORKSPACE}/dependencies/lib/libblas.a" \
             -DLAPACK_LIBRARIES=${GITHUB_WORKSPACE}/dependencies/lib/liblapack.a \
             -DHIGHS=${GITHUB_WORKSPACE}/dependencies/lib/libhighs.a \
diff --git a/.github/workflows/unopy-test-example.yml b/.github/workflows/unopy-test-example.yml
@@ -53,6 +53,12 @@ jobs:
       - name: Compile and install unopy
         run: pip install . -v
 
+      - name: Set the environment variables for OpenMP
+        shell: bash
+        run: |
+          echo "OMP_CANCELLATION=TRUE" >> "$GITHUB_ENV"
+          echo "OMP_PROC_BIND=TRUE"    >> "$GITHUB_ENV"
+
       - name: Run example
         working-directory: ${{github.workspace}}/interfaces/Python/example
-        run: python example_hs015.py
+        run: python example_hs015.py
diff --git a/dependencies/scripts/download_dependencies.sh b/dependencies/scripts/download_dependencies.sh
@@ -23,9 +23,9 @@ esac
 cd dependencies
 
 # download BQPD
-VERSION="v1.0.0"
-REPO="https://github.com/leyffer/BQPD_jll.jl/releases/download/BQPD-${VERSION}%2B0"
-ASSET_NAME="BQPD.${VERSION}.${ARCH}-${OS}-libgfortran5.tar.gz"
+VERSION="1.0.0"
+REPO="https://github.com/leyffer/BQPD_jll.jl/releases/download/BQPD-v${VERSION}%2B0"
+ASSET_NAME="BQPD.v${VERSION}.${ARCH}-${OS}-libgfortran5.tar.gz"
 ASSET_URL="${REPO}/${ASSET_NAME}"
 echo "Downloading: ${ASSET_URL}"
 curl -L -o BQPD.tar.gz "$ASSET_URL"
@@ -45,11 +45,3 @@ pwd
 # delete unwanted directories
 # rm -rf lib/cmake/cblas* lib/cmake/lapack* lib/pkgconfig
 rm -rf lib/cmake lib/pkgconfig
-
-if [[ "$OS" == "w64-mingw32" ]]; then
-    cd ..
-    ASSET_URL="https://github.com/JuliaLang/PackageCompiler.jl/releases/download/v1.0.0/x86_64-8.1.0-release-posix-seh-rt_v6-rev0.tar.gz"
-    curl -L -o libstdc++.tar.gz "$ASSET_URL"
-    tar -xzvf libstdc++.tar.gz
-    cp ./mingw64/lib/gcc/x86_64-w64-mingw32/8.1.0/libstdc++.a ./dependencies/lib/libstdc++.a
-fi
diff --git a/interfaces/C/example/CMakeLists.txt b/interfaces/C/example/CMakeLists.txt
