Enhance media page (#14)

* enhance media page

* ignore for false negative link check

Author: d33bs

.github/workflows/link-check.yaml

@@ -22,6 +22,7 @@ jobs:
             --exclude-path node_modules
             --exclude "^https://forum\\.image\\.sc/"
             --exclude "^https://www\\.broadinstitute\\.org/"
+            --exclude "^https://www\\.eu-openscreen\\.eu/"
             --exclude "^https://doi\\.org/"
             'content/**/*.md'
             '*.md'

content/media/_index.md

@@ -5,29 +5,31 @@ showDate: false
 showAuthor: false
 ---
 
-## Talks
+## 🎤 Talks
 
-- **CytoData 2020** — Gregory Way — _Pycytominer: a computational ecosystem supporting
-  reproducible image-based profiling_ —
-  [Watch on YouTube](https://www.youtube.com/watch?v=XJuGOnZygOU)
+- **SBI2 2025:** _Cytomining ecosystem overview_
+  • [Watch on YouTube](https://www.youtube.com/watch?v=5uZgvdOetmo)
+- **ParslFest 2025:** _With great Parsl comes great portability: Using Parsl through CytoTable for harmonizing single-cell data_
+  • [Watch on YouTube](https://www.youtube.com/watch?v=GMHrb2c7ULs) · [View slides](https://doi.org/10.5281/zenodo.16995782)
+- **CytoData 2020:** _Pycytominer: a computational ecosystem supporting reproducible image-based profiling_
+  • [Watch on YouTube](https://www.youtube.com/watch?v=XJuGOnZygOU)
 
-## Posters
+## 🖼️ Posters
 
-- **SBI2 2024** — Jenna Tomkinson — _Single-cell Morphology Quality Control (coSMicQC)_ —
-  [View poster](https://doi.org/10.5281/zenodo.13829960)
-- **SciPy 2023** — Dave Bunten — _Cross-language Data Grammar for Single-cell Research Feature
-  Engineering_ —
-  [View poster](https://doi.org/10.5281/zenodo.8137185)
-- **SBI2 2023** — Dave Bunten — _CytoTable: High performance and scalable single-cell morphology
-  feature engineering_ —
-  [View poster](https://doi.org/10.5281/zenodo.16945320)
-- **ParslFest 2025** — Dave Bunten — _With great Parsl comes great portability: Using Parsl
-  through CytoTable for harmonizing single-cell data_ —
-  [View slides](https://doi.org/10.5281/zenodo.16995782)
+- **OME 2026 Community Meeting:** _OME-Arrow: Unifying Images, Metadata, and Features in an Interoperable Data Model_
+  • [View poster](https://zenodo.org/records/20152235)
+- **SBI2 2025:** _Exploring single-cell images and profiles together with CytoDataFrame_
+  • [View poster](https://zenodo.org/records/17524610)
+- **SBI2 2024:** _Single-cell Morphology Quality Control (coSMicQC)_
+  • [View poster](https://doi.org/10.5281/zenodo.13829960)
+- **SciPy 2023:** _Cross-language Data Grammar for Single-cell Research Feature Engineering_
+  • [View poster](https://doi.org/10.5281/zenodo.8137185)
+- **SBI2 2023:** _CytoTable: High performance and scalable single-cell morphology feature engineering_
+  • [View poster](https://doi.org/10.5281/zenodo.16945320)
 
-## Publications
+## 📚 Publications
 
-### Reviews
+### 🔎 Reviews
 
 - Serrano, E. et al. Progress and new challenges in image-based profiling.
   *Mol. Syst. Biol.* **22**, 624–658 (2026).
@@ -36,23 +38,28 @@ showAuthor: false
   *Nat. Methods* **14**, 849–863 (2017).
   [doi:10.1038/nmeth.4397](https://doi.org/10.1038/nmeth.4397)
 
-### Tools
+### 🧰 Tools
 
-- Serrano, E. et al. Reproducible image-based profiling with Pycytominer.
+#### Peer-reviewed
+
+- **CytoTable ([tool page](https://cytomining.github.io/tools/cytotable/)):** Bunten, D. et al. Scalable data harmonization for single-cell image-based profiling with CytoTable.
+  *Patterns* **7**, 101514 (2026).
+  [doi:10.1016/j.patter.2026.101514](https://doi.org/10.1016/j.patter.2026.101514)
+- **Pycytominer ([tool page](https://cytomining.github.io/tools/pycytominer/)):** Serrano, E. et al. Reproducible image-based profiling with Pycytominer.
   *Nat. Methods* **22**, 677–680 (2025).
   [doi:10.1038/s41592-025-02611-8](https://doi.org/10.1038/s41592-025-02611-8)
-- Kalinin, A.A. et al. A versatile information retrieval framework for evaluating profile strength and similarity.
+- **copairs ([tool page](https://cytomining.github.io/tools/copairs/)):** Kalinin, A.A. et al. A versatile information retrieval framework for evaluating profile strength and similarity.
   *Nat. Commun.* **16**, 5181 (2025).
   [doi:10.1038/s41467-025-60306-2](https://doi.org/10.1038/s41467-025-60306-2)
-- Moshkov, N. et al. Learning representations for image-based profiling of perturbations.
+- **DeepProfiler ([tool page](https://cytomining.github.io/tools/deepprofiler/)):** Moshkov, N. et al. Learning representations for image-based profiling of perturbations.
   *Nat. Commun.* **15**, 1594 (2024).
   [doi:10.1038/s41467-024-45999-1](https://doi.org/10.1038/s41467-024-45999-1)
-- Bunten, D. et al. Scalable data harmonization for single-cell image-based profiling with CytoTable.
-  *Patterns* **7**, 101514 (2026).
-  [doi:10.1016/j.patter.2026.101514](https://doi.org/10.1016/j.patter.2026.101514)
-- Serrano, E., Li, W.S. & Way, G.P. Single-cell hit calling in high-content imaging screens with Buscar.
+
+#### Preprints
+
+- **buscar ([tool page](https://cytomining.github.io/experimental/buscar/)):** Serrano, E., Li, W.S. & Way, G.P. Single-cell hit calling in high-content imaging screens with Buscar.
   *bioRxiv* (2026).
   [doi:10.64898/2026.04.15.718737](https://doi.org/10.64898/2026.04.15.718737)
-- Tomkinson, J. et al. Stellar quality control for single-cell image-based profiling with coSMicQC.
+- **coSMicQC ([tool page](https://cytomining.github.io/tools/cosmicqc/)):** Tomkinson, J. et al. Stellar quality control for single-cell image-based profiling with coSMicQC.
   *bioRxiv* (2025).
   [doi:10.1101/2025.10.14.682427](https://doi.org/10.1101/2025.10.14.682427)