Merge pull request #4 from danforthcenter/zeeuqsze-threshold-repo-dl

Updated Colab Environment Detection

Author: nfahlgren

modules/01.thresholding.ipynb

@@ -30,6 +30,11 @@
     "        # Give access and mount your Google Drive (need a Google Account)\n",
     "        from google.colab import drive\n",
     "        drive.mount('/content/gdrive')\n",
+    "        %cd '/content/gdrive/MyDrive/'\n",
+    "\n",
+    "        # Clone the GitHub repo to access to necessary files in the tutorial\n",
+    "        !git clone https://github.com/danforthcenter/plantcv-tutorial-threshold.git\n",
+    "        %cd './plantcv-tutorial-threshold/modules/'\n",
     "        \n",
     "        # Enable widget feature with matplotlib\n",
     "        from google.colab import output\n",

modules/02.edge-detection.ipynb

@@ -28,6 +28,11 @@
     "        # Give access and mount your Google Drive (need a Google Account)\n",
     "        from google.colab import drive\n",
     "        drive.mount('/content/gdrive')\n",
+    "        %cd '/content/gdrive/MyDrive/'\n",
+    "\n",
+    "        # Clone the GitHub repo to access to necessary files in the tutorial\n",
+    "        !git clone https://github.com/danforthcenter/plantcv-tutorial-threshold.git\n",
+    "        %cd './plantcv-tutorial-threshold/modules/'\n",
     "        \n",
     "        # Enable widget feature with matplotlib\n",
     "        from google.colab import output\n",

modules/03.supervised-machine-learning.ipynb

@@ -28,6 +28,11 @@
     "        # Give access and mount your Google Drive (need a Google Account)\n",
     "        from google.colab import drive\n",
     "        drive.mount('/content/gdrive')\n",
+    "        %cd '/content/gdrive/MyDrive/'\n",
+    "\n",
+    "        # Clone the GitHub repo to access to necessary files in the tutorial\n",
+    "        !git clone https://github.com/danforthcenter/plantcv-tutorial-threshold.git\n",
+    "        %cd './plantcv-tutorial-threshold/modules/'\n",
     "        \n",
     "        # Enable widget feature with matplotlib\n",
     "        from google.colab import output\n",

modules/04.unsupervised-machine-learning.ipynb

@@ -28,6 +28,11 @@
     "        # Give access and mount your Google Drive (need a Google Account)\n",
     "        from google.colab import drive\n",
     "        drive.mount('/content/gdrive')\n",
+    "        %cd '/content/gdrive/MyDrive/'\n",
+    "\n",
+    "        # Clone the GitHub repo to access to necessary files in the tutorial\n",
+    "        !git clone https://github.com/danforthcenter/plantcv-tutorial-threshold.git\n",
+    "        %cd './plantcv-tutorial-threshold/modules/'\n",
     "        \n",
     "        # Enable widget feature with matplotlib\n",
     "        from google.colab import output\n",

modules/05.background-subtraction.ipynb

@@ -32,6 +32,11 @@
     "        # Give access and mount your Google Drive (need a Google Account)\n",
     "        from google.colab import drive\n",
     "        drive.mount('/content/gdrive')\n",
+    "        %cd '/content/gdrive/MyDrive/'\n",
+    "\n",
+    "        # Clone the GitHub repo to access to necessary files in the tutorial\n",
+    "        !git clone https://github.com/danforthcenter/plantcv-tutorial-threshold.git\n",
+    "        %cd './plantcv-tutorial-threshold/modules/'\n",
     "        \n",
     "        # Enable widget feature with matplotlib\n",
     "        from google.colab import output\n",

modules/06.2d-thresholding.ipynb

@@ -30,6 +30,11 @@
     "        # Give access and mount your Google Drive (need a Google Account)\n",
     "        from google.colab import drive\n",
     "        drive.mount('/content/gdrive')\n",
+    "        %cd '/content/gdrive/MyDrive/'\n",
+    "\n",
+    "        # Clone the GitHub repo to access to necessary files in the tutorial\n",
+    "        !git clone https://github.com/danforthcenter/plantcv-tutorial-threshold.git\n",
+    "        %cd './plantcv-tutorial-threshold/modules/'\n",
     "        \n",
     "        # Enable widget feature with matplotlib\n",
     "        from google.colab import output\n",