Update bbconf/modules/bedfiles.py

khoroshevskyi · Copilot · web-flow · commit 02aae8879be3 · 2025-09-11T11:39:52.000-04:00
Co-authored-by: Copilot &lt;175728472+Copilot@users.noreply.github.com&gt;
diff --git a/bbconf/modules/bedfiles.py b/bbconf/modules/bedfiles.py
@@ -2190,7 +2190,7 @@ def search_external_file(self, source: str, accession: str) -> BedListSearchResu
                 f"Source {source} is not supported. Supported sources are: 'geo', 'encode'."
             )
 
-        if source == "geo" and accession.startswith("gse"):
+        if source == "geo" and accession.upper().startswith("GSE"):
             statement = (
                 select(Bed)
                 .join(BedMetadata, Bed.id == BedMetadata.id)

Original file line number	Diff line number	Diff line change
`@@ -2190,7 +2190,7 @@ def search_external_file(self, source: str, accession: str) -> BedListSearchResu`
`2190`	`2190`	`f"Source {source} is not supported. Supported sources are: 'geo', 'encode'."`
`2191`	`2191`	`)`
`2192`	`2192`
`2193`		`- if source == "geo" and accession.startswith("gse"):`
	`2193`	`+ if source == "geo" and accession.upper().startswith("GSE"):`
`2194`	`2194`	`statement = (`
`2195`	`2195`	`select(Bed)`
`2196`	`2196`	`.join(BedMetadata, Bed.id == BedMetadata.id)`