Merge pull request #116 from databio/dev

Release 0.14.11

Author: khoroshevskyi

bbconf/modules/bedfiles.py

@@ -2374,6 +2374,7 @@ def search_external_file(self, source: str, accession: str) -> BedListSearchResu
         Returns:
             List of bed file metadata.
         """
+
         if source not in ["geo", "encode"]:
             raise BedBaseConfError(
                 f"Source {source} is not supported. Supported sources are: 'geo', 'encode'."
@@ -2392,6 +2393,34 @@ def search_external_file(self, source: str, accession: str) -> BedListSearchResu
                     )
                 )
             )
+        elif source == "geo" and accession.upper().startswith("GSM"):
+            statement = (
+                select(Bed)
+                .join(BedMetadata, Bed.id == BedMetadata.id)
+                .where(
+                    BedMetadata.global_sample_id.contains(
+                        cast(
+                            [f"{source}:{accession}"],
+                            postgresql.ARRAY(postgresql.VARCHAR),
+                        )
+                    )
+                )
+            )
+        elif source == "encode" and accession.upper().startswith("ENCSR"):
+            accession = accession.upper()
+            statement = (
+                select(Bed)
+                .join(BedMetadata, Bed.id == BedMetadata.id)
+                .where(
+                    BedMetadata.global_experiment_id.contains(
+                        cast(
+                            [f"{source}:{accession}"],
+                            postgresql.ARRAY(postgresql.VARCHAR),
+                        )
+                    )
+                )
+            )
+            print(statement)
         else:
             statement = (
                 select(Bed)

docs/changelog.md

@@ -2,6 +2,11 @@
 
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format.
 
+### [0.14.11] - 2026-04-15
+### Fixed:
+- External id search
+
+
 ### [0.14.10] - 2026-04-05
 ### Fixed:
 - version info bug

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "bbconf"
-version = "0.14.10"
+version = "0.14.11"
 description = "Configuration and data management tool for BEDbase"
 readme = "README.md"
 license = "BSD-2-Clause"