Updated bbconf to newest yacman

khoroshevskyi · khoroshevskyi · commit bcd3e0c3b433 · 2026-04-22T11:04:31.000-04:00
diff --git a/bbconf/config_parser/bedbaseconfig.py b/bbconf/config_parser/bedbaseconfig.py
@@ -130,7 +130,7 @@ def _read_config_file(config_path: str) -> ConfigFile:
             Parsed ConfigFile object.
         """
 
-        _config = yacman.YAMLConfigManager(filepath=config_path).exp
+        _config = yacman.YAMLConfigManager.from_yaml_file(filepath=config_path).exp
 
         config_dict = {}
         for field_name, annotation in ConfigFile.model_fields.items():
diff --git a/pyproject.toml b/pyproject.toml
@@ -18,7 +18,7 @@ classifiers = [
     "Topic :: Scientific/Engineering :: Bio-Informatics",
 ]
 dependencies = [
-    "yacman == 0.9.4",
+    "yacman >= 1.0.0",
     "sqlalchemy >= 2.0.0",
     "gtars >= 0.5.3",
     "geniml[ml] >= 0.8.4",

Original file line number	Diff line number	Diff line change
`@@ -18,7 +18,7 @@ classifiers = [`
`18`	`18`	`"Topic :: Scientific/Engineering :: Bio-Informatics",`
`19`	`19`	`]`
`20`	`20`	`dependencies = [`
`21`		`- "yacman == 0.9.4",`
	`21`	`+ "yacman >= 1.0.0",`
`22`	`22`	`"sqlalchemy >= 2.0.0",`
`23`	`23`	`"gtars >= 0.5.3",`
`24`	`24`	`"geniml[ml] >= 0.8.4",`